Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   D073_RS16695 Genome accession   NZ_CP041145
Coordinates   3368016..3368705 (-) Length   229 a.a.
NCBI ID   WP_020956418.1    Uniprot ID   -
Organism   Bacillus velezensis strain At1     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3363016..3373705
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D073_RS16660 (D073_3156) - 3363213..3363695 (-) 483 WP_003151394.1 flagellar protein FlgN -
  D073_RS16665 (D073_3157) flgM 3363710..3363976 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  D073_RS16670 (D073_3158) - 3364046..3364465 (-) 420 WP_007407479.1 TIGR03826 family flagellar region protein -
  D073_RS16675 comFC 3364539..3365228 (-) 690 WP_197538283.1 phosphoribosyltransferase family protein Machinery gene
  D073_RS16680 (D073_3160) - 3365234..3365518 (-) 285 WP_007407481.1 late competence development ComFB family protein -
  D073_RS16685 (D073_3161) comFA 3365576..3366961 (-) 1386 WP_020956417.1 DEAD/DEAH box helicase Machinery gene
  D073_RS16690 (D073_3162) - 3367070..3367918 (-) 849 WP_007407483.1 DegV family protein -
  D073_RS16695 (D073_3163) degU 3368016..3368705 (-) 690 WP_020956418.1 two-component system response regulator DegU Regulator
  D073_RS16700 (D073_3164) degS 3368782..3369945 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  D073_RS16705 (D073_3165) - 3370168..3370815 (+) 648 WP_007614107.1 YigZ family protein -
  D073_RS16710 (D073_3166) - 3370820..3372040 (+) 1221 WP_020956419.1 LCP family protein -
  D073_RS16715 (D073_3167) - 3372147..3373223 (-) 1077 WP_003151382.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25824.49 Da        Isoelectric Point: 5.9446

>NTDB_id=369851 D073_RS16695 WP_020956418.1 3368016..3368705(-) (degU) [Bacillus velezensis strain At1]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVGVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=369851 D073_RS16695 WP_020956418.1 3368016..3368705(-) (degU) [Bacillus velezensis strain At1]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTATCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGCGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGTGGAGTTTCTGCTCATCCTCAGCATGAGGTTTACCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAACCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGGCGTGGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-219)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

99.563

100

0.996

Multiple sequence alignment