Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RCAP_RS08955 Genome accession   NC_014034
Coordinates   1951066..1951593 (-) Length   175 a.a.
NCBI ID   WP_013067529.1    Uniprot ID   -
Organism   Rhodobacter capsulatus SB 1003     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1946066..1956593
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RCAP_RS08940 (RCAP_rcc01802) hflX 1946078..1947361 (+) 1284 WP_013067526.1 GTPase HflX -
  RCAP_RS08945 (RCAP_rcc01803) - 1947448..1949919 (-) 2472 WP_013067527.1 penicillin acylase family protein -
  RCAP_RS08950 (RCAP_rcc01804) - 1949981..1950889 (+) 909 WP_148214847.1 NAD(P)-dependent oxidoreductase -
  RCAP_RS08955 (RCAP_rcc01805) ssb 1951066..1951593 (-) 528 WP_013067529.1 single-stranded DNA-binding protein Machinery gene
  RCAP_RS08960 (RCAP_rcc01806) - 1951785..1952405 (+) 621 WP_013067530.1 lytic transglycosylase domain-containing protein -
  RCAP_RS08965 (RCAP_rcc01807) - 1952482..1953039 (-) 558 WP_013067531.1 YSC84-related protein -
  RCAP_RS08970 (RCAP_rcc01808) hemB 1953148..1954146 (-) 999 WP_013067532.1 porphobilinogen synthase -
  RCAP_RS08975 (RCAP_rcc01809) - 1954247..1954819 (+) 573 WP_238530189.1 component of SufBCD complex -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 18403.04 Da        Isoelectric Point: 6.9836

>NTDB_id=36968 RCAP_RS08955 WP_013067529.1 1951066..1951593(-) (ssb) [Rhodobacter capsulatus SB 1003]
MAGSVNKVILVGNLGRDPEVRTFANGGKVCNLRIATSETWRDKQSGERKERTEWHSVAIFNEPLAKIAEQYLRKGSTVYI
EGQLETRKWTDQQGQERYTTEVVLRPYTGNLTLLGGRDGGGSRGGGNYARGSQGGGYGGGYDDGAGYGGGGGGSSAPSSG
GGGGGRSDFDDDIPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=36968 RCAP_RS08955 WP_013067529.1 1951066..1951593(-) (ssb) [Rhodobacter capsulatus SB 1003]
ATGGCAGGATCGGTGAACAAGGTCATTCTGGTGGGCAACCTCGGGCGCGACCCGGAGGTGCGCACGTTCGCCAATGGCGG
CAAGGTCTGCAACCTGCGCATCGCCACCTCGGAGACCTGGCGCGACAAGCAATCGGGCGAGCGCAAGGAGCGCACCGAAT
GGCATTCCGTCGCGATCTTCAACGAACCGCTGGCGAAGATCGCCGAACAATATCTGCGCAAGGGCTCGACCGTCTATATC
GAGGGCCAGCTCGAAACCCGCAAATGGACCGACCAGCAGGGCCAGGAACGCTACACGACCGAGGTGGTGCTGCGCCCCTA
TACGGGCAACCTGACGCTGCTTGGCGGCCGGGATGGCGGCGGCTCGCGCGGCGGTGGCAATTACGCGCGCGGTTCGCAGG
GCGGCGGCTATGGCGGCGGCTACGATGACGGCGCGGGCTATGGCGGCGGTGGCGGCGGCTCCTCGGCCCCCTCGTCGGGC
GGCGGCGGCGGTGGCCGCTCGGATTTCGACGACGACATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

52.571

100

0.526
  ssb Glaesserella parasuis strain SC1401

47.059

100

0.503
  ssb Neisseria meningitidis MC58

40.984

100

0.429
  ssb Neisseria gonorrhoeae MS11

39.227

100

0.406

Multiple sequence alignment