Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | FG175_RS05475 | Genome accession | NZ_CP041134 |
| Coordinates | 1147486..1147941 (-) | Length | 151 a.a. |
| NCBI ID | WP_141958182.1 | Uniprot ID | - |
| Organism | Serratia marcescens strain WVU-010 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1145935..1181278 | 1147486..1147941 | within | 0 |
Gene organization within MGE regions
Location: 1145935..1181278
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FG175_RS05455 (FG175_05455) | - | 1145935..1146471 (-) | 537 | WP_260439595.1 | SAM-dependent methyltransferase | - |
| FG175_RS05460 (FG175_05460) | - | 1146468..1146941 (-) | 474 | WP_141984617.1 | hypothetical protein | - |
| FG175_RS05465 (FG175_05465) | - | 1146938..1147117 (-) | 180 | WP_141984618.1 | hypothetical protein | - |
| FG175_RS05470 (FG175_05470) | - | 1147126..1147458 (-) | 333 | WP_141958180.1 | hypothetical protein | - |
| FG175_RS05475 (FG175_05475) | ssb | 1147486..1147941 (-) | 456 | WP_141958182.1 | single-stranded DNA-binding protein | Machinery gene |
| FG175_RS05480 (FG175_05480) | - | 1147942..1148568 (-) | 627 | WP_141984619.1 | ERF family protein | - |
| FG175_RS25615 | - | 1148577..1148747 (-) | 171 | WP_185741765.1 | hypothetical protein | - |
| FG175_RS05485 (FG175_05485) | - | 1148857..1148988 (-) | 132 | WP_141958187.1 | protease FtsH-inhibitory lysogeny factor CIII | - |
| FG175_RS05490 (FG175_05490) | - | 1149145..1149384 (-) | 240 | WP_141958189.1 | hypothetical protein | - |
| FG175_RS05495 (FG175_05495) | - | 1149504..1149701 (-) | 198 | WP_141958191.1 | hypothetical protein | - |
| FG175_RS05500 (FG175_05500) | - | 1149719..1149967 (-) | 249 | WP_071883557.1 | hypothetical protein | - |
| FG175_RS05505 (FG175_05505) | - | 1150534..1150779 (-) | 246 | WP_141984620.1 | hypothetical protein | - |
| FG175_RS05510 (FG175_05510) | - | 1151073..1151819 (-) | 747 | WP_260439597.1 | XRE family transcriptional regulator | - |
| FG175_RS05515 (FG175_05515) | - | 1151854..1152081 (+) | 228 | WP_038876081.1 | helix-turn-helix domain-containing protein | - |
| FG175_RS05520 (FG175_05520) | - | 1152210..1152488 (+) | 279 | WP_141984621.1 | CII family transcriptional regulator | - |
| FG175_RS25620 | - | 1152524..1152688 (+) | 165 | WP_165877134.1 | hypothetical protein | - |
| FG175_RS05525 (FG175_05525) | - | 1152675..1153571 (+) | 897 | WP_141984622.1 | DNA replication protein | - |
| FG175_RS05530 (FG175_05530) | - | 1153558..1154964 (+) | 1407 | WP_141984623.1 | DnaB-like helicase C-terminal domain-containing protein | - |
| FG175_RS05535 (FG175_05535) | - | 1155035..1155514 (-) | 480 | WP_260439599.1 | DUF4145 domain-containing protein | - |
| FG175_RS05545 (FG175_05545) | - | 1155871..1156308 (+) | 438 | WP_141984626.1 | recombination protein NinB | - |
| FG175_RS05550 (FG175_05550) | - | 1156335..1156475 (+) | 141 | WP_230200350.1 | NinE family protein | - |
| FG175_RS05555 (FG175_05555) | - | 1156844..1156972 (+) | 129 | WP_141984628.1 | protein NinF | - |
| FG175_RS05560 (FG175_05560) | - | 1156962..1157588 (+) | 627 | WP_141984629.1 | recombination protein NinG | - |
| FG175_RS05565 (FG175_05565) | - | 1157973..1158407 (+) | 435 | WP_376697710.1 | antiterminator Q family protein | - |
| FG175_RS05575 (FG175_05575) | - | 1158902..1159234 (+) | 333 | WP_042784830.1 | phage holin, lambda family | - |
| FG175_RS05580 (FG175_05580) | - | 1159218..1159652 (+) | 435 | WP_141984631.1 | lysozyme | - |
| FG175_RS05585 (FG175_05585) | - | 1159649..1160095 (+) | 447 | WP_141984632.1 | lysis protein | - |
| FG175_RS05590 (FG175_05590) | - | 1160265..1160516 (+) | 252 | WP_141984633.1 | hypothetical protein | - |
| FG175_RS05595 (FG175_05595) | - | 1160889..1161119 (+) | 231 | WP_141984634.1 | DUF2560 family protein | - |
| FG175_RS25625 | - | 1161130..1161279 (+) | 150 | WP_185741870.1 | hypothetical protein | - |
| FG175_RS05600 (FG175_05600) | - | 1161279..1161611 (+) | 333 | WP_141958224.1 | DUF1737 domain-containing protein | - |
| FG175_RS05605 (FG175_05605) | - | 1161614..1162054 (+) | 441 | WP_141958226.1 | terminase | - |
| FG175_RS05610 (FG175_05610) | - | 1162051..1163463 (+) | 1413 | WP_141958228.1 | PBSX family phage terminase large subunit | - |
| FG175_RS05615 (FG175_05615) | - | 1163466..1165592 (+) | 2127 | WP_141958230.1 | portal protein | - |
| FG175_RS05620 (FG175_05620) | - | 1165606..1166490 (+) | 885 | WP_141958232.1 | phage capsid protein | - |
| FG175_RS05625 (FG175_05625) | - | 1166502..1167776 (+) | 1275 | WP_141958234.1 | P22 phage major capsid protein family protein | - |
| FG175_RS05630 (FG175_05630) | - | 1167816..1168001 (+) | 186 | WP_141958236.1 | hypothetical protein | - |
| FG175_RS05635 (FG175_05635) | - | 1167976..1168458 (+) | 483 | WP_004940081.1 | packaged DNA stabilization gp4 family protein | - |
| FG175_RS05640 (FG175_05640) | - | 1168466..1169893 (+) | 1428 | WP_141984635.1 | packaged DNA stabilization protein | - |
| FG175_RS05645 (FG175_05645) | - | 1169896..1170390 (+) | 495 | WP_141958240.1 | HNH endonuclease | - |
| FG175_RS05650 (FG175_05650) | - | 1170390..1171298 (+) | 909 | WP_260439737.1 | phage tail protein | - |
| FG175_RS05655 (FG175_05655) | - | 1171298..1171756 (+) | 459 | WP_141958244.1 | DUF2824 family protein | - |
| FG175_RS05660 (FG175_05660) | - | 1171767..1172465 (+) | 699 | WP_141958246.1 | DNA transfer protein | - |
| FG175_RS05665 (FG175_05665) | - | 1172465..1173814 (+) | 1350 | WP_141984636.1 | phage DNA ejection protein | - |
| FG175_RS05670 (FG175_05670) | - | 1173814..1176291 (+) | 2478 | WP_141984637.1 | lytic transglycosylase domain-containing protein | - |
| FG175_RS05675 (FG175_05675) | - | 1176309..1176782 (-) | 474 | WP_260439605.1 | hypothetical protein | - |
| FG175_RS05680 (FG175_05680) | - | 1176800..1177051 (-) | 252 | WP_141984638.1 | Arc family DNA-binding protein | - |
| FG175_RS25770 | - | 1177460..1179685 (+) | 2226 | WP_260439606.1 | phage tailspike protein | - |
| FG175_RS05690 (FG175_05690) | - | 1180073..1181278 (+) | 1206 | WP_141958260.1 | tyrosine-type recombinase/integrase | - |
Sequence
Protein
Download Length: 151 a.a. Molecular weight: 16787.77 Da Isoelectric Point: 6.4853
>NTDB_id=369622 FG175_RS05475 WP_141958182.1 1147486..1147941(-) (ssb) [Serratia marcescens strain WVU-010]
MASKGINKAIIIGNLGKDPEVRYTQNGGAIANLTIATSESWRDKQSGEQKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGRLTTRKWEDQAGVERYTTEIHVNVGGVMQMIGSKQEASQSGNQPSPPKQQNKPQPSNEPPMDFDDDIPF
MASKGINKAIIIGNLGKDPEVRYTQNGGAIANLTIATSESWRDKQSGEQKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGRLTTRKWEDQAGVERYTTEIHVNVGGVMQMIGSKQEASQSGNQPSPPKQQNKPQPSNEPPMDFDDDIPF
Nucleotide
Download Length: 456 bp
>NTDB_id=369622 FG175_RS05475 WP_141958182.1 1147486..1147941(-) (ssb) [Serratia marcescens strain WVU-010]
ATGGCTAGCAAAGGCATCAACAAAGCAATCATCATCGGCAACCTTGGGAAAGACCCAGAGGTTCGCTACACGCAAAATGG
TGGAGCAATCGCCAACCTGACGATTGCCACCTCTGAATCGTGGCGTGATAAACAATCTGGCGAGCAAAAGGAAAAGACTG
AATGGCACCGCGTGGTGCTGTTTGGAAAGCTGGCTGAAGTTGCCGGTGAGTATCTTCGAAAAGGCTCGCAGGTTTATATC
GAAGGGAGGCTGACAACGCGCAAGTGGGAAGATCAGGCTGGAGTCGAGCGATATACGACAGAGATTCATGTCAATGTCGG
CGGTGTGATGCAGATGATTGGCAGCAAGCAAGAAGCATCACAATCTGGCAATCAGCCGTCACCACCTAAGCAGCAAAATA
AACCACAACCGTCGAATGAGCCACCTATGGACTTCGACGACGACATTCCATTCTAG
ATGGCTAGCAAAGGCATCAACAAAGCAATCATCATCGGCAACCTTGGGAAAGACCCAGAGGTTCGCTACACGCAAAATGG
TGGAGCAATCGCCAACCTGACGATTGCCACCTCTGAATCGTGGCGTGATAAACAATCTGGCGAGCAAAAGGAAAAGACTG
AATGGCACCGCGTGGTGCTGTTTGGAAAGCTGGCTGAAGTTGCCGGTGAGTATCTTCGAAAAGGCTCGCAGGTTTATATC
GAAGGGAGGCTGACAACGCGCAAGTGGGAAGATCAGGCTGGAGTCGAGCGATATACGACAGAGATTCATGTCAATGTCGG
CGGTGTGATGCAGATGATTGGCAGCAAGCAAGAAGCATCACAATCTGGCAATCAGCCGTCACCACCTAAGCAGCAAAATA
AACCACAACCGTCGAATGAGCCACCTATGGACTTCGACGACGACATTCCATTCTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
60.452 |
100 |
0.709 |
| ssb | Glaesserella parasuis strain SC1401 |
50.276 |
100 |
0.603 |
| ssb | Neisseria gonorrhoeae MS11 |
40.449 |
100 |
0.477 |
| ssb | Neisseria meningitidis MC58 |
39.773 |
100 |
0.464 |