Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | FG172_RS05475 | Genome accession | NZ_CP041130 |
| Coordinates | 1147518..1147973 (-) | Length | 151 a.a. |
| NCBI ID | WP_141958182.1 | Uniprot ID | - |
| Organism | Serratia marcescens strain WVU-007 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1140698..1181310 | 1147518..1147973 | within | 0 |
Gene organization within MGE regions
Location: 1140698..1181310
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FG172_RS05390 (FG172_05390) | - | 1140698..1141819 (-) | 1122 | WP_141984611.1 | site-specific integrase | - |
| FG172_RS25765 | - | 1141954..1142046 (-) | 93 | Protein_1031 | helix-turn-helix domain-containing protein | - |
| FG172_RS05400 (FG172_05400) | - | 1142053..1142244 (-) | 192 | WP_141958157.1 | hypothetical protein | - |
| FG172_RS05405 (FG172_05405) | - | 1142241..1142450 (-) | 210 | WP_141958159.1 | hypothetical protein | - |
| FG172_RS05410 (FG172_05410) | - | 1142443..1142664 (-) | 222 | WP_141958161.1 | hypothetical protein | - |
| FG172_RS05415 (FG172_05415) | - | 1142735..1142989 (-) | 255 | WP_060429110.1 | DNA polymerase III subunit theta | - |
| FG172_RS05420 (FG172_05420) | - | 1142999..1143259 (-) | 261 | WP_060429108.1 | hypothetical protein | - |
| FG172_RS05425 (FG172_05425) | - | 1143317..1144051 (-) | 735 | WP_141984612.1 | hypothetical protein | - |
| FG172_RS05430 (FG172_05430) | - | 1144062..1144295 (-) | 234 | WP_063990597.1 | hypothetical protein | - |
| FG172_RS05435 (FG172_05435) | - | 1144297..1144776 (-) | 480 | WP_141984613.1 | hypothetical protein | - |
| FG172_RS05440 (FG172_05440) | - | 1144769..1144993 (-) | 225 | WP_141984614.1 | hypothetical protein | - |
| FG172_RS05445 (FG172_05445) | - | 1144983..1145216 (-) | 234 | WP_141984615.1 | hypothetical protein | - |
| FG172_RS05450 (FG172_05450) | - | 1145585..1145980 (-) | 396 | WP_141984616.1 | hypothetical protein | - |
| FG172_RS05455 (FG172_05455) | - | 1145967..1146503 (-) | 537 | WP_260439595.1 | SAM-dependent methyltransferase | - |
| FG172_RS05460 (FG172_05460) | - | 1146500..1146973 (-) | 474 | WP_141984617.1 | hypothetical protein | - |
| FG172_RS05465 (FG172_05465) | - | 1146970..1147149 (-) | 180 | WP_141984618.1 | hypothetical protein | - |
| FG172_RS05470 (FG172_05470) | - | 1147158..1147490 (-) | 333 | WP_141958180.1 | hypothetical protein | - |
| FG172_RS05475 (FG172_05475) | ssb | 1147518..1147973 (-) | 456 | WP_141958182.1 | single-stranded DNA-binding protein | Machinery gene |
| FG172_RS05480 (FG172_05480) | - | 1147974..1148600 (-) | 627 | WP_141984619.1 | ERF family protein | - |
| FG172_RS25615 | - | 1148609..1148779 (-) | 171 | WP_185741765.1 | hypothetical protein | - |
| FG172_RS05485 (FG172_05485) | - | 1148889..1149020 (-) | 132 | WP_141958187.1 | protease FtsH-inhibitory lysogeny factor CIII | - |
| FG172_RS05490 (FG172_05490) | - | 1149177..1149416 (-) | 240 | WP_141958189.1 | hypothetical protein | - |
| FG172_RS05495 (FG172_05495) | - | 1149536..1149733 (-) | 198 | WP_141958191.1 | hypothetical protein | - |
| FG172_RS05500 (FG172_05500) | - | 1149751..1149999 (-) | 249 | WP_071883557.1 | hypothetical protein | - |
| FG172_RS05505 (FG172_05505) | - | 1150566..1150811 (-) | 246 | WP_141984620.1 | hypothetical protein | - |
| FG172_RS05510 (FG172_05510) | - | 1151105..1151851 (-) | 747 | WP_260439597.1 | XRE family transcriptional regulator | - |
| FG172_RS05515 (FG172_05515) | - | 1151886..1152113 (+) | 228 | WP_038876081.1 | helix-turn-helix domain-containing protein | - |
| FG172_RS05520 (FG172_05520) | - | 1152242..1152520 (+) | 279 | WP_141984621.1 | CII family transcriptional regulator | - |
| FG172_RS25620 | - | 1152556..1152720 (+) | 165 | WP_165877134.1 | hypothetical protein | - |
| FG172_RS05525 (FG172_05525) | - | 1152707..1153603 (+) | 897 | WP_141984622.1 | DNA replication protein | - |
| FG172_RS05530 (FG172_05530) | - | 1153590..1154996 (+) | 1407 | WP_141984623.1 | DnaB-like helicase C-terminal domain-containing protein | - |
| FG172_RS05535 (FG172_05535) | - | 1155067..1155546 (-) | 480 | WP_260439599.1 | DUF4145 domain-containing protein | - |
| FG172_RS05545 (FG172_05545) | - | 1155903..1156340 (+) | 438 | WP_141984626.1 | recombination protein NinB | - |
| FG172_RS05550 (FG172_05550) | - | 1156367..1156507 (+) | 141 | WP_230200350.1 | NinE family protein | - |
| FG172_RS05555 (FG172_05555) | - | 1156876..1157004 (+) | 129 | WP_141984628.1 | protein NinF | - |
| FG172_RS05560 (FG172_05560) | - | 1156994..1157620 (+) | 627 | WP_141984629.1 | recombination protein NinG | - |
| FG172_RS05565 (FG172_05565) | - | 1158005..1158439 (+) | 435 | WP_376697710.1 | antiterminator Q family protein | - |
| FG172_RS05575 (FG172_05575) | - | 1158934..1159266 (+) | 333 | WP_042784830.1 | phage holin, lambda family | - |
| FG172_RS05580 (FG172_05580) | - | 1159250..1159684 (+) | 435 | WP_141984631.1 | lysozyme | - |
| FG172_RS05585 (FG172_05585) | - | 1159681..1160127 (+) | 447 | WP_141984632.1 | lysis protein | - |
| FG172_RS05590 (FG172_05590) | - | 1160297..1160548 (+) | 252 | WP_141984633.1 | hypothetical protein | - |
| FG172_RS05595 (FG172_05595) | - | 1160921..1161151 (+) | 231 | WP_141984634.1 | DUF2560 family protein | - |
| FG172_RS25625 | - | 1161162..1161311 (+) | 150 | WP_185741870.1 | hypothetical protein | - |
| FG172_RS05600 (FG172_05600) | - | 1161311..1161643 (+) | 333 | WP_141958224.1 | DUF1737 domain-containing protein | - |
| FG172_RS05605 (FG172_05605) | - | 1161646..1162086 (+) | 441 | WP_141958226.1 | terminase | - |
| FG172_RS05610 (FG172_05610) | - | 1162083..1163495 (+) | 1413 | WP_141958228.1 | PBSX family phage terminase large subunit | - |
| FG172_RS05615 (FG172_05615) | - | 1163498..1165624 (+) | 2127 | WP_141958230.1 | portal protein | - |
| FG172_RS05620 (FG172_05620) | - | 1165638..1166522 (+) | 885 | WP_141958232.1 | phage capsid protein | - |
| FG172_RS05625 (FG172_05625) | - | 1166534..1167808 (+) | 1275 | WP_141958234.1 | P22 phage major capsid protein family protein | - |
| FG172_RS05630 (FG172_05630) | - | 1167848..1168033 (+) | 186 | WP_141958236.1 | hypothetical protein | - |
| FG172_RS05635 (FG172_05635) | - | 1168008..1168490 (+) | 483 | WP_004940081.1 | packaged DNA stabilization gp4 family protein | - |
| FG172_RS05640 (FG172_05640) | - | 1168498..1169925 (+) | 1428 | WP_141984635.1 | packaged DNA stabilization protein | - |
| FG172_RS05645 (FG172_05645) | - | 1169928..1170422 (+) | 495 | WP_141958240.1 | HNH endonuclease | - |
| FG172_RS05650 (FG172_05650) | - | 1170422..1171330 (+) | 909 | WP_260439737.1 | phage tail protein | - |
| FG172_RS05655 (FG172_05655) | - | 1171330..1171788 (+) | 459 | WP_141958244.1 | DUF2824 family protein | - |
| FG172_RS05660 (FG172_05660) | - | 1171799..1172497 (+) | 699 | WP_141958246.1 | DNA transfer protein | - |
| FG172_RS05665 (FG172_05665) | - | 1172497..1173846 (+) | 1350 | WP_141984636.1 | phage DNA ejection protein | - |
| FG172_RS05670 (FG172_05670) | - | 1173846..1176323 (+) | 2478 | WP_141984637.1 | lytic transglycosylase domain-containing protein | - |
| FG172_RS05675 (FG172_05675) | - | 1176341..1176814 (-) | 474 | WP_260439605.1 | hypothetical protein | - |
| FG172_RS05680 (FG172_05680) | - | 1176832..1177083 (-) | 252 | WP_141984638.1 | Arc family DNA-binding protein | - |
| FG172_RS25770 | - | 1177492..1179717 (+) | 2226 | WP_260439606.1 | phage tailspike protein | - |
| FG172_RS05690 (FG172_05690) | - | 1180105..1181310 (+) | 1206 | WP_141958260.1 | tyrosine-type recombinase/integrase | - |
Sequence
Protein
Download Length: 151 a.a. Molecular weight: 16787.77 Da Isoelectric Point: 6.4853
>NTDB_id=369574 FG172_RS05475 WP_141958182.1 1147518..1147973(-) (ssb) [Serratia marcescens strain WVU-007]
MASKGINKAIIIGNLGKDPEVRYTQNGGAIANLTIATSESWRDKQSGEQKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGRLTTRKWEDQAGVERYTTEIHVNVGGVMQMIGSKQEASQSGNQPSPPKQQNKPQPSNEPPMDFDDDIPF
MASKGINKAIIIGNLGKDPEVRYTQNGGAIANLTIATSESWRDKQSGEQKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGRLTTRKWEDQAGVERYTTEIHVNVGGVMQMIGSKQEASQSGNQPSPPKQQNKPQPSNEPPMDFDDDIPF
Nucleotide
Download Length: 456 bp
>NTDB_id=369574 FG172_RS05475 WP_141958182.1 1147518..1147973(-) (ssb) [Serratia marcescens strain WVU-007]
ATGGCTAGCAAAGGCATCAACAAAGCAATCATCATCGGCAACCTTGGGAAAGACCCAGAGGTTCGCTACACGCAAAATGG
TGGAGCAATCGCCAACCTGACGATTGCCACCTCTGAATCGTGGCGTGATAAACAATCTGGCGAGCAAAAGGAAAAGACTG
AATGGCACCGCGTGGTGCTGTTTGGAAAGCTGGCTGAAGTTGCCGGTGAGTATCTTCGAAAAGGCTCGCAGGTTTATATC
GAAGGGAGGCTGACAACGCGCAAGTGGGAAGATCAGGCTGGAGTCGAGCGATATACGACAGAGATTCATGTCAATGTCGG
CGGTGTGATGCAGATGATTGGCAGCAAGCAAGAAGCATCACAATCTGGCAATCAGCCGTCACCACCTAAGCAGCAAAATA
AACCACAACCGTCGAATGAGCCACCTATGGACTTCGACGACGACATTCCATTCTAG
ATGGCTAGCAAAGGCATCAACAAAGCAATCATCATCGGCAACCTTGGGAAAGACCCAGAGGTTCGCTACACGCAAAATGG
TGGAGCAATCGCCAACCTGACGATTGCCACCTCTGAATCGTGGCGTGATAAACAATCTGGCGAGCAAAAGGAAAAGACTG
AATGGCACCGCGTGGTGCTGTTTGGAAAGCTGGCTGAAGTTGCCGGTGAGTATCTTCGAAAAGGCTCGCAGGTTTATATC
GAAGGGAGGCTGACAACGCGCAAGTGGGAAGATCAGGCTGGAGTCGAGCGATATACGACAGAGATTCATGTCAATGTCGG
CGGTGTGATGCAGATGATTGGCAGCAAGCAAGAAGCATCACAATCTGGCAATCAGCCGTCACCACCTAAGCAGCAAAATA
AACCACAACCGTCGAATGAGCCACCTATGGACTTCGACGACGACATTCCATTCTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
60.452 |
100 |
0.709 |
| ssb | Glaesserella parasuis strain SC1401 |
50.276 |
100 |
0.603 |
| ssb | Neisseria gonorrhoeae MS11 |
40.449 |
100 |
0.477 |
| ssb | Neisseria meningitidis MC58 |
39.773 |
100 |
0.464 |