Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | FG169_RS05480 | Genome accession | NZ_CP041125 |
| Coordinates | 1148127..1148582 (-) | Length | 151 a.a. |
| NCBI ID | WP_141958182.1 | Uniprot ID | - |
| Organism | Serratia marcescens strain WVU-004 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1138678..1181642 | 1148127..1148582 | within | 0 |
Gene organization within MGE regions
Location: 1138678..1181642
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FG169_RS05370 (FG169_05370) | ybcJ | 1138678..1138890 (-) | 213 | WP_049278727.1 | ribosome-associated protein YbcJ | - |
| FG169_RS05375 (FG169_05375) | folD | 1138901..1139767 (-) | 867 | WP_004940177.1 | bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD | - |
| FG169_RS05380 (FG169_05380) | - | 1139973..1140182 (+) | 210 | WP_060442520.1 | hypothetical protein | - |
| FG169_RS05390 (FG169_05390) | - | 1140697..1141818 (-) | 1122 | WP_141958154.1 | site-specific integrase | - |
| FG169_RS25640 | - | 1141953..1142045 (-) | 93 | Protein_1031 | helix-turn-helix domain-containing protein | - |
| FG169_RS05400 (FG169_05400) | - | 1142052..1142243 (-) | 192 | WP_141958157.1 | hypothetical protein | - |
| FG169_RS05405 (FG169_05405) | - | 1142240..1142449 (-) | 210 | WP_141958159.1 | hypothetical protein | - |
| FG169_RS05410 (FG169_05410) | - | 1142442..1142663 (-) | 222 | WP_141958161.1 | hypothetical protein | - |
| FG169_RS05415 (FG169_05415) | - | 1142734..1142988 (-) | 255 | WP_141958163.1 | DNA polymerase III subunit theta | - |
| FG169_RS05420 (FG169_05420) | - | 1142998..1143258 (-) | 261 | WP_060429108.1 | hypothetical protein | - |
| FG169_RS05425 (FG169_05425) | - | 1143316..1143933 (-) | 618 | WP_141958165.1 | hypothetical protein | - |
| FG169_RS05430 (FG169_05430) | - | 1144103..1144324 (-) | 222 | WP_141958168.1 | hypothetical protein | - |
| FG169_RS05435 (FG169_05435) | - | 1144326..1144751 (-) | 426 | WP_141958170.1 | hypothetical protein | - |
| FG169_RS05440 (FG169_05440) | - | 1144741..1144941 (-) | 201 | WP_141958172.1 | hypothetical protein | - |
| FG169_RS05445 (FG169_05445) | - | 1144938..1145153 (-) | 216 | WP_141958174.1 | hypothetical protein | - |
| FG169_RS05450 (FG169_05450) | - | 1145146..1145406 (-) | 261 | WP_141958176.1 | hypothetical protein | - |
| FG169_RS05455 (FG169_05455) | - | 1145399..1146295 (-) | 897 | WP_141958178.1 | phosphoadenosine phosphosulfate reductase family protein | - |
| FG169_RS05460 (FG169_05460) | - | 1146282..1146818 (-) | 537 | WP_260439595.1 | SAM-dependent methyltransferase | - |
| FG169_RS05465 (FG169_05465) | - | 1146815..1147582 (-) | 768 | WP_260440042.1 | hypothetical protein | - |
| FG169_RS05475 (FG169_05475) | - | 1147767..1148099 (-) | 333 | WP_141958180.1 | hypothetical protein | - |
| FG169_RS05480 (FG169_05480) | ssb | 1148127..1148582 (-) | 456 | WP_141958182.1 | single-stranded DNA-binding protein | Machinery gene |
| FG169_RS05485 (FG169_05485) | - | 1148583..1149209 (-) | 627 | WP_141958185.1 | ERF family protein | - |
| FG169_RS25490 | - | 1149218..1149388 (-) | 171 | WP_185741765.1 | hypothetical protein | - |
| FG169_RS05490 (FG169_05490) | - | 1149498..1149629 (-) | 132 | WP_141958187.1 | protease FtsH-inhibitory lysogeny factor CIII | - |
| FG169_RS05495 (FG169_05495) | - | 1149786..1150025 (-) | 240 | WP_141958189.1 | hypothetical protein | - |
| FG169_RS05500 (FG169_05500) | - | 1150145..1150342 (-) | 198 | WP_141958191.1 | hypothetical protein | - |
| FG169_RS05505 (FG169_05505) | - | 1150360..1150608 (-) | 249 | WP_071883557.1 | hypothetical protein | - |
| FG169_RS05510 (FG169_05510) | - | 1151232..1151966 (-) | 735 | WP_141958193.1 | helix-turn-helix transcriptional regulator | - |
| FG169_RS05515 (FG169_05515) | - | 1152084..1152311 (+) | 228 | WP_060430772.1 | YdaS family helix-turn-helix protein | - |
| FG169_RS05520 (FG169_05520) | - | 1152421..1152699 (+) | 279 | WP_004940137.1 | CII family transcriptional regulator | - |
| FG169_RS25495 | - | 1152734..1152898 (+) | 165 | WP_165877134.1 | hypothetical protein | - |
| FG169_RS05525 (FG169_05525) | - | 1152885..1153784 (+) | 900 | WP_141958195.1 | DNA replication protein | - |
| FG169_RS05530 (FG169_05530) | - | 1153771..1155183 (+) | 1413 | WP_141958197.1 | DnaB-like helicase C-terminal domain-containing protein | - |
| FG169_RS05535 (FG169_05535) | - | 1155207..1155446 (+) | 240 | WP_141958199.1 | hypothetical protein | - |
| FG169_RS05540 (FG169_05540) | - | 1155450..1155689 (+) | 240 | WP_141958201.1 | DUF3850 domain-containing protein | - |
| FG169_RS05545 (FG169_05545) | - | 1155692..1156144 (+) | 453 | WP_141958203.1 | recombination protein NinB | - |
| FG169_RS05550 (FG169_05550) | - | 1156171..1156311 (+) | 141 | WP_260440043.1 | NinE family protein | - |
| FG169_RS05555 (FG169_05555) | - | 1156308..1156499 (+) | 192 | WP_141958208.1 | hypothetical protein | - |
| FG169_RS05560 (FG169_05560) | - | 1156859..1156987 (+) | 129 | WP_141958210.1 | protein NinF | - |
| FG169_RS05565 (FG169_05565) | - | 1156980..1157561 (+) | 582 | WP_141958212.1 | recombination protein NinG | - |
| FG169_RS05570 (FG169_05570) | - | 1157909..1158400 (+) | 492 | WP_141958214.1 | antiterminator Q family protein | - |
| FG169_RS05580 (FG169_05580) | - | 1159151..1159483 (+) | 333 | WP_004940112.1 | phage holin, lambda family | - |
| FG169_RS05585 (FG169_05585) | - | 1159467..1159901 (+) | 435 | WP_141958216.1 | lysozyme | - |
| FG169_RS05590 (FG169_05590) | - | 1159898..1160365 (+) | 468 | WP_141958218.1 | lysis protein | - |
| FG169_RS05595 (FG169_05595) | - | 1160377..1160625 (+) | 249 | WP_141958220.1 | hypothetical protein | - |
| FG169_RS05600 (FG169_05600) | - | 1160699..1160935 (+) | 237 | WP_141958222.1 | DUF2560 family protein | - |
| FG169_RS05605 (FG169_05605) | - | 1160937..1161461 (+) | 525 | WP_226908233.1 | hypothetical protein | - |
| FG169_RS25500 | - | 1161436..1161585 (+) | 150 | WP_185741766.1 | hypothetical protein | - |
| FG169_RS05610 (FG169_05610) | - | 1161585..1161917 (+) | 333 | WP_141958224.1 | DUF1737 domain-containing protein | - |
| FG169_RS05615 (FG169_05615) | - | 1161920..1162360 (+) | 441 | WP_141958226.1 | terminase | - |
| FG169_RS05620 (FG169_05620) | - | 1162357..1163769 (+) | 1413 | WP_141958228.1 | PBSX family phage terminase large subunit | - |
| FG169_RS05625 (FG169_05625) | - | 1163772..1165898 (+) | 2127 | WP_141958230.1 | portal protein | - |
| FG169_RS05630 (FG169_05630) | - | 1165912..1166796 (+) | 885 | WP_141958232.1 | phage capsid protein | - |
| FG169_RS05635 (FG169_05635) | - | 1166808..1168082 (+) | 1275 | WP_141958234.1 | P22 phage major capsid protein family protein | - |
| FG169_RS05640 (FG169_05640) | - | 1168122..1168307 (+) | 186 | WP_141958236.1 | hypothetical protein | - |
| FG169_RS05645 (FG169_05645) | - | 1168282..1168764 (+) | 483 | WP_004940081.1 | packaged DNA stabilization gp4 family protein | - |
| FG169_RS05650 (FG169_05650) | - | 1168772..1170199 (+) | 1428 | WP_141958238.1 | packaged DNA stabilization protein | - |
| FG169_RS05655 (FG169_05655) | - | 1170202..1170696 (+) | 495 | WP_141958240.1 | HNH endonuclease | - |
| FG169_RS05660 (FG169_05660) | - | 1170696..1171604 (+) | 909 | WP_260439737.1 | phage tail protein | - |
| FG169_RS05665 (FG169_05665) | - | 1171604..1172062 (+) | 459 | WP_141958244.1 | DUF2824 family protein | - |
| FG169_RS05670 (FG169_05670) | - | 1172073..1172771 (+) | 699 | WP_141958246.1 | DNA transfer protein | - |
| FG169_RS05675 (FG169_05675) | - | 1172771..1174225 (+) | 1455 | WP_141958249.1 | phage DNA ejection protein | - |
| FG169_RS05680 (FG169_05680) | - | 1174225..1176012 (+) | 1788 | WP_141958251.1 | DNA transfer protein | - |
| FG169_RS05685 (FG169_05685) | - | 1176203..1176679 (-) | 477 | WP_141958253.1 | hypothetical protein | - |
| FG169_RS05690 (FG169_05690) | - | 1176682..1177083 (-) | 402 | WP_141958255.1 | hypothetical protein | - |
| FG169_RS05695 (FG169_05695) | - | 1177083..1177322 (-) | 240 | WP_141958257.1 | Arc family DNA-binding protein | - |
| FG169_RS25645 | - | 1177824..1180049 (+) | 2226 | WP_260440044.1 | phage tailspike protein | - |
| FG169_RS05705 (FG169_05705) | - | 1180437..1181642 (+) | 1206 | WP_141958260.1 | tyrosine-type recombinase/integrase | - |
Sequence
Protein
Download Length: 151 a.a. Molecular weight: 16787.77 Da Isoelectric Point: 6.4853
>NTDB_id=369526 FG169_RS05480 WP_141958182.1 1148127..1148582(-) (ssb) [Serratia marcescens strain WVU-004]
MASKGINKAIIIGNLGKDPEVRYTQNGGAIANLTIATSESWRDKQSGEQKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGRLTTRKWEDQAGVERYTTEIHVNVGGVMQMIGSKQEASQSGNQPSPPKQQNKPQPSNEPPMDFDDDIPF
MASKGINKAIIIGNLGKDPEVRYTQNGGAIANLTIATSESWRDKQSGEQKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGRLTTRKWEDQAGVERYTTEIHVNVGGVMQMIGSKQEASQSGNQPSPPKQQNKPQPSNEPPMDFDDDIPF
Nucleotide
Download Length: 456 bp
>NTDB_id=369526 FG169_RS05480 WP_141958182.1 1148127..1148582(-) (ssb) [Serratia marcescens strain WVU-004]
ATGGCTAGCAAAGGCATCAACAAAGCAATCATCATCGGCAACCTTGGGAAAGACCCAGAGGTTCGCTACACGCAAAATGG
TGGAGCAATCGCCAACCTGACGATTGCCACCTCTGAATCGTGGCGTGATAAACAATCTGGCGAGCAAAAGGAAAAGACTG
AATGGCACCGCGTGGTGCTGTTTGGAAAGCTGGCTGAAGTTGCCGGTGAGTATCTTCGAAAAGGCTCGCAGGTTTATATC
GAAGGGAGGCTGACAACGCGCAAGTGGGAAGATCAGGCTGGAGTCGAGCGATATACGACAGAGATTCATGTCAATGTCGG
CGGTGTGATGCAGATGATTGGCAGCAAGCAAGAAGCATCACAATCTGGCAATCAGCCGTCACCACCTAAGCAGCAAAATA
AACCACAACCGTCGAATGAGCCACCTATGGACTTCGACGACGACATTCCATTCTAG
ATGGCTAGCAAAGGCATCAACAAAGCAATCATCATCGGCAACCTTGGGAAAGACCCAGAGGTTCGCTACACGCAAAATGG
TGGAGCAATCGCCAACCTGACGATTGCCACCTCTGAATCGTGGCGTGATAAACAATCTGGCGAGCAAAAGGAAAAGACTG
AATGGCACCGCGTGGTGCTGTTTGGAAAGCTGGCTGAAGTTGCCGGTGAGTATCTTCGAAAAGGCTCGCAGGTTTATATC
GAAGGGAGGCTGACAACGCGCAAGTGGGAAGATCAGGCTGGAGTCGAGCGATATACGACAGAGATTCATGTCAATGTCGG
CGGTGTGATGCAGATGATTGGCAGCAAGCAAGAAGCATCACAATCTGGCAATCAGCCGTCACCACCTAAGCAGCAAAATA
AACCACAACCGTCGAATGAGCCACCTATGGACTTCGACGACGACATTCCATTCTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
60.452 |
100 |
0.709 |
| ssb | Glaesserella parasuis strain SC1401 |
50.276 |
100 |
0.603 |
| ssb | Neisseria gonorrhoeae MS11 |
40.449 |
100 |
0.477 |
| ssb | Neisseria meningitidis MC58 |
39.773 |
100 |
0.464 |