Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   FY141_RS05940 Genome accession   NZ_CP048532
Coordinates   1189225..1189809 (-) Length   194 a.a.
NCBI ID   WP_163117918.1    Uniprot ID   -
Organism   Agrobacterium tumefaciens strain Sta002     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1184225..1194809
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FY141_RS05925 (FY141_05870) - 1186969..1187598 (+) 630 WP_003502754.1 MarC family protein -
  FY141_RS05930 (FY141_05875) - 1187725..1188873 (+) 1149 WP_099085417.1 HPP family protein -
  FY141_RS05935 (FY141_05880) - 1188928..1189191 (-) 264 WP_223564850.1 hypothetical protein -
  FY141_RS05940 (FY141_05885) ssb 1189225..1189809 (-) 585 WP_163117918.1 single-stranded DNA-binding protein Machinery gene
  FY141_RS05945 (FY141_05890) uvrA 1190074..1192995 (+) 2922 WP_099085416.1 excinuclease ABC subunit UvrA Machinery gene
  FY141_RS05950 (FY141_05895) - 1193052..1193852 (+) 801 WP_099085415.1 DUF72 domain-containing protein -

Sequence

Protein


Download         Length: 194 a.a.        Molecular weight: 20677.63 Da        Isoelectric Point: 4.7391

>NTDB_id=369280 FY141_RS05940 WP_163117918.1 1189225..1189809(-) (ssb) [Agrobacterium tumefaciens strain Sta002]
MQLPVMMAGGQDDEMAGSVNKVILIGNVGADPEIRRTQDGRPIANLRIATSETWRDRNSGERKEKTEWHTVVVFNEGLCK
VVEQYVKKGAKLYIEGQLQTRKWQDQTGNDRYSTEIVLQGFNSTLTMLDGRGEGGGAARSGGGDFGGGNDYGSGGGSSYG
GGYDQQPSSRGGSARGGSQPAGGFSNDMDDDIPF

Nucleotide


Download         Length: 585 bp        

>NTDB_id=369280 FY141_RS05940 WP_163117918.1 1189225..1189809(-) (ssb) [Agrobacterium tumefaciens strain Sta002]
ATGCAATTGCCGGTCATGATGGCCGGCGGACAGGATGACGAGATGGCTGGTAGCGTAAACAAGGTAATTCTGATCGGGAA
CGTGGGCGCTGATCCCGAAATCCGCCGGACGCAGGATGGCCGCCCCATCGCCAACCTGCGCATCGCCACCTCGGAGACCT
GGCGTGACCGCAATAGCGGCGAGCGCAAGGAAAAGACCGAATGGCACACCGTCGTGGTTTTCAACGAAGGCCTGTGCAAG
GTCGTCGAGCAATATGTCAAGAAGGGCGCCAAGCTCTATATCGAAGGCCAGCTGCAGACCCGCAAATGGCAGGACCAGAC
CGGTAACGACCGTTACTCCACCGAAATCGTGCTGCAGGGCTTCAACTCCACGCTGACCATGCTTGACGGTCGCGGCGAGG
GCGGCGGTGCTGCCCGCAGCGGCGGTGGCGATTTCGGCGGCGGCAACGATTATGGCAGCGGCGGCGGCTCCAGCTATGGC
GGCGGTTACGACCAGCAGCCCTCGTCGCGCGGCGGCTCTGCCCGTGGCGGCAGCCAGCCCGCCGGCGGCTTCTCCAATGA
CATGGACGACGACATCCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(19-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

45.178

100

0.459
  ssb Vibrio cholerae strain A1552

48.864

90.722

0.443
  ssb Neisseria gonorrhoeae MS11

39.106

92.268

0.361
  ssb Neisseria meningitidis MC58

39.106

92.268

0.361

Multiple sequence alignment