Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   FJM75_RS13280 Genome accession   NZ_CP041063
Coordinates   2654577..2655080 (-) Length   167 a.a.
NCBI ID   WP_165999004.1    Uniprot ID   -
Organism   Bacillus sp. Cs-700     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2649577..2660080
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FJM75_RS13255 rplI 2649743..2650186 (-) 444 WP_165998996.1 50S ribosomal protein L9 -
  FJM75_RS13260 - 2650183..2652159 (-) 1977 WP_165998998.1 DHH family phosphoesterase -
  FJM75_RS13265 - 2652175..2653101 (-) 927 WP_165999000.1 YybS family protein -
  FJM75_RS13270 - 2653830..2654126 (-) 297 WP_165999002.1 HPr family phosphocarrier protein -
  FJM75_RS13275 rpsR 2654277..2654513 (-) 237 WP_098445608.1 30S ribosomal protein S18 -
  FJM75_RS13280 ssbA 2654577..2655080 (-) 504 WP_165999004.1 single-stranded DNA-binding protein Machinery gene
  FJM75_RS13285 rpsF 2655107..2655403 (-) 297 WP_048311133.1 30S ribosomal protein S6 -
  FJM75_RS13290 ychF 2655534..2656634 (-) 1101 WP_098445610.1 redox-regulated ATPase YchF -
  FJM75_RS13295 - 2656827..2657024 (-) 198 WP_165999006.1 DUF951 domain-containing protein -
  FJM75_RS13300 - 2657038..2657922 (-) 885 WP_242688439.1 mechanosensitive ion channel family protein -
  FJM75_RS13305 - 2657948..2658970 (-) 1023 WP_165999008.1 hypothetical protein -
  FJM75_RS13310 yyaC 2659096..2659722 (+) 627 WP_165999010.1 spore protease YyaC -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 18286.88 Da        Isoelectric Point: 4.9557

>NTDB_id=369250 FJM75_RS13280 WP_165999004.1 2654577..2655080(-) (ssbA) [Bacillus sp. Cs-700]
MLNRVVLVGRLTKDPELRYTPSGVAVANFTLAVNRPFTNQQGDREADFINIVVWRRQAENAANFLKKGSLAGVDGRVQTR
SYDNSQGQRVFVTEVMAESVQFLEPKGSNQGGSGSGNYGGGNQNRETGGYGNQNQNRDNNRDHSNFGDDPFASDGKPIDI
SDDDLPF

Nucleotide


Download         Length: 504 bp        

>NTDB_id=369250 FJM75_RS13280 WP_165999004.1 2654577..2655080(-) (ssbA) [Bacillus sp. Cs-700]
ATGCTGAATCGCGTCGTATTAGTTGGACGTTTAACAAAAGACCCTGAATTGCGTTATACCCCTAGTGGCGTAGCGGTTGC
GAACTTCACACTTGCTGTGAATCGCCCGTTTACGAATCAGCAGGGAGACCGCGAAGCTGATTTTATCAACATTGTTGTAT
GGCGCAGACAGGCAGAAAATGCAGCCAATTTCTTGAAAAAAGGCAGCCTTGCTGGTGTAGATGGACGAGTTCAGACTCGC
TCTTATGATAATAGCCAGGGACAGCGTGTGTTTGTGACAGAAGTGATGGCTGAAAGCGTCCAATTTCTCGAGCCTAAAGG
TTCTAACCAAGGCGGTAGCGGAAGCGGCAACTACGGTGGCGGCAACCAAAACAGAGAAACCGGCGGTTACGGGAATCAGA
ACCAAAATCGTGATAACAACCGTGATCACTCCAATTTTGGAGATGACCCGTTTGCGAGCGATGGCAAGCCGATCGACATT
TCAGATGATGACTTGCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

73.714

100

0.772
  ssb Latilactobacillus sakei subsp. sakei 23K

56.14

100

0.575
  ssbB Bacillus subtilis subsp. subtilis str. 168

60.377

63.473

0.383
  ssb Glaesserella parasuis strain SC1401

35

100

0.377

Multiple sequence alignment