Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   FY144_RS06860 Genome accession   NZ_CP048518
Coordinates   1384421..1386526 (+) Length   701 a.a.
NCBI ID   WP_060724331.1    Uniprot ID   A0A822UYR9
Organism   Agrobacterium tumefaciens strain Sta005     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1379421..1391526
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FY144_RS06845 (FY144_06785) - 1379929..1380270 (-) 342 WP_003508033.1 hypothetical protein -
  FY144_RS06850 (FY144_06790) mfd 1380420..1383917 (-) 3498 WP_060724305.1 transcription-repair coupling factor -
  FY144_RS06855 (FY144_06795) - 1383921..1384232 (-) 312 WP_003508031.1 succinate dehydrogenase assembly factor 2 -
  FY144_RS06860 (FY144_06800) recG 1384421..1386526 (+) 2106 WP_060724331.1 ATP-dependent DNA helicase RecG Machinery gene
  FY144_RS06865 (FY144_06805) - 1386539..1386811 (+) 273 WP_003508029.1 hypothetical protein -
  FY144_RS06870 (FY144_06810) - 1386866..1387123 (+) 258 WP_060724304.1 type II toxin-antitoxin system Phd/YefM family antitoxin -
  FY144_RS06875 (FY144_06815) - 1387120..1387503 (+) 384 WP_060724303.1 type II toxin-antitoxin system VapC family toxin -
  FY144_RS06880 (FY144_06820) - 1387507..1388175 (-) 669 WP_003508022.1 DUF502 domain-containing protein -
  FY144_RS06885 (FY144_06825) - 1388189..1388692 (-) 504 WP_065695077.1 GNAT family N-acetyltransferase -
  FY144_RS06890 (FY144_06830) glmS 1388689..1390515 (-) 1827 WP_020809235.1 glutamine--fructose-6-phosphate transaminase (isomerizing) -
  FY144_RS06895 (FY144_06835) - 1390452..1390694 (-) 243 WP_141681089.1 hypothetical protein -

Sequence

Protein


Download         Length: 701 a.a.        Molecular weight: 76460.13 Da        Isoelectric Point: 7.2726

>NTDB_id=369170 FY144_RS06860 WP_060724331.1 1384421..1386526(+) (recG) [Agrobacterium tumefaciens strain Sta005]
MRPAILDPLFASVSTLAGVGPKLADLLAKLLSRENADDTRVIDLLFHAPSNVIDRRNRPGIALAAPGAIVTIQGRVDRHQ
PPPPGNRSAPYRVFLHDETGELALTFFRAKGDWLSKALPVDEEVLVSGKVDWFNGRASMVHPDFMVKLSEAENLPLVEAV
YPMTAGLSPKVLRRAIEGGLSKLPVFPEWIDETLKTRQGFGDVASSFRELHDPRDSADIEPQAPARRRLAYDEFLAGQLS
LALVRQRLRKVAGQPIRAKGDVAAKILSQLPFSLTPSQSAAVKDILTDMAGEDRMLRLLQGDVGAGKTLVALMAMATAVE
AGGQAVLMAPTEILARQHYATISKLAQAAGITVEVLTGRTKGKERREIEERVASGEAQIVIGTHALFQDSVSYKNLVLAV
VDEQHRFGVHQRLRLTAKGITPHMLVMTATPIPRTLVLAAFGDMDVSKLTEKPAGRKPIQTVTIPTERIGDIVERLRSAL
KDGKKAYWICPLVEETEESDLMSAEERHAVLSQMLGANIGLIHGRMSGPEKDAAMLAFKSGETRLLVATTVVEVGVDVPD
ATIMVIEHAERFGLAQLHQLRGRVGRGDEASTCILLYKGPLSENGRARLSILRDSEDGFLIAEEDLKLRGEGELLGTRQS
GTPGFRIASLEAHADLLEIARKDAAYVIERDPELTAPRGNALRTLLYLHRRDEAIRFLHAG

Nucleotide


Download         Length: 2106 bp        

>NTDB_id=369170 FY144_RS06860 WP_060724331.1 1384421..1386526(+) (recG) [Agrobacterium tumefaciens strain Sta005]
ATGCGCCCAGCCATTCTCGATCCGCTGTTTGCTTCCGTCTCCACCCTTGCCGGTGTGGGGCCGAAGCTTGCCGATCTTCT
GGCCAAGCTCTTGAGCCGGGAAAACGCCGATGACACCCGCGTGATCGATCTCCTGTTCCACGCGCCGTCCAACGTCATCG
ACCGCCGCAACCGCCCCGGCATTGCGCTTGCCGCACCCGGCGCCATTGTCACCATTCAGGGACGAGTGGACCGCCACCAG
CCGCCACCGCCGGGAAACCGCTCCGCGCCCTATCGCGTCTTCCTGCATGACGAGACCGGCGAACTGGCGCTGACCTTCTT
CCGCGCCAAGGGCGACTGGCTGTCCAAGGCGCTGCCGGTCGATGAGGAGGTTCTCGTCAGCGGCAAGGTGGACTGGTTCA
ATGGCCGCGCCTCCATGGTGCATCCGGATTTCATGGTGAAACTTTCCGAGGCCGAAAACCTGCCACTTGTGGAAGCCGTT
TATCCCATGACCGCCGGACTGTCCCCCAAGGTGCTGCGGCGGGCGATCGAAGGCGGGCTGTCGAAGCTGCCGGTCTTTCC
GGAGTGGATCGATGAAACGCTGAAGACCAGGCAAGGCTTCGGCGATGTCGCTTCGAGCTTCCGTGAGTTGCACGACCCGC
GTGACAGCGCCGATATCGAGCCGCAGGCTCCAGCGCGCAGGCGGCTTGCCTATGACGAATTCCTCGCCGGGCAGCTGTCA
CTCGCATTGGTGCGCCAGCGGCTGCGCAAAGTGGCGGGCCAGCCGATCCGCGCCAAGGGTGATGTCGCCGCAAAAATCCT
GTCGCAACTGCCCTTCTCGCTGACACCGAGCCAGAGCGCTGCGGTGAAGGATATTCTGACTGACATGGCCGGCGAAGACC
GCATGTTGCGGCTGCTGCAGGGCGATGTCGGCGCAGGCAAGACGCTGGTGGCGCTGATGGCGATGGCAACGGCCGTGGAG
GCAGGCGGACAGGCGGTGCTGATGGCCCCGACCGAAATCCTCGCCCGGCAGCACTACGCCACCATTTCCAAGCTCGCTCA
GGCCGCGGGCATTACCGTCGAAGTGCTGACCGGCCGCACCAAGGGCAAGGAGCGGCGCGAGATCGAGGAGCGCGTCGCAT
CAGGTGAAGCGCAGATCGTCATCGGCACCCATGCGTTGTTTCAGGACAGCGTGAGTTACAAGAACCTCGTGCTGGCCGTG
GTGGACGAACAGCACCGTTTCGGCGTTCATCAACGCCTGCGCCTCACCGCCAAGGGCATCACCCCGCATATGCTGGTCAT
GACTGCCACGCCCATTCCGCGCACGCTGGTTCTGGCCGCCTTCGGCGACATGGATGTCTCCAAGCTCACCGAAAAGCCGG
CCGGCCGCAAGCCTATCCAGACGGTAACGATCCCCACCGAACGGATCGGCGACATTGTCGAGCGGCTGCGTTCCGCGCTG
AAGGATGGCAAGAAGGCCTACTGGATCTGCCCGCTGGTGGAAGAAACGGAAGAATCCGACCTTATGTCGGCGGAGGAGCG
GCACGCAGTTCTCTCGCAGATGCTGGGCGCCAATATCGGCCTCATCCATGGCCGCATGAGCGGCCCGGAGAAGGACGCCG
CCATGCTCGCCTTCAAGAGCGGTGAAACCCGGCTGTTGGTGGCAACGACGGTGGTGGAAGTGGGCGTCGATGTGCCTGAC
GCGACGATCATGGTCATCGAACATGCCGAACGTTTCGGCCTTGCCCAGCTTCACCAGCTGCGTGGCCGGGTTGGACGCGG
TGACGAGGCCTCCACCTGCATCCTGCTCTACAAGGGGCCGCTCAGCGAAAACGGCCGCGCCCGGCTTTCCATCCTGCGTG
ACAGCGAGGATGGCTTCCTGATCGCGGAAGAGGATTTGAAGCTGCGCGGCGAAGGCGAGTTGCTCGGCACCCGCCAGTCC
GGCACGCCGGGATTCCGCATCGCCAGCCTGGAAGCCCACGCCGACCTTCTGGAAATCGCCCGCAAGGACGCGGCCTACGT
CATCGAGCGCGACCCCGAACTGACGGCCCCGCGCGGCAATGCGCTGCGCACCTTGCTCTACCTGCACCGCCGGGACGAAG
CGATCCGCTTCCTGCACGCCGGCTGA

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(275-432)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(616-683)

Helicase conserved C-terminal domain (Helicase_C)

(476-587)

RecG wedge domain (RecG_wedge)

(18-180)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A822UYR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

42.018

94.722

0.398
  recG/mmsA Streptococcus pneumoniae R6

39.528

96.719

0.382
  recG/mmsA Streptococcus pneumoniae R36A

39.528

96.719

0.382
  recG Bacillus subtilis subsp. subtilis str. 168

38.856

97.29

0.378

Multiple sequence alignment