Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   FIV34_RS02845 Genome accession   NZ_CP041046
Coordinates   632717..633775 (+) Length   352 a.a.
NCBI ID   WP_139979488.1    Uniprot ID   A0A4Y5YZF9
Organism   Luteibacter pinisoli strain MAH-14     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 627717..638775
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FIV34_RS02835 (FIV34_02835) - 629194..629844 (-) 651 WP_139979484.1 hypothetical protein -
  FIV34_RS02840 (FIV34_02840) - 629906..632482 (-) 2577 WP_139979486.1 penicillin-binding protein 1A -
  FIV34_RS02845 (FIV34_02845) pilM 632717..633775 (+) 1059 WP_139979488.1 pilus assembly protein PilM Machinery gene
  FIV34_RS02850 (FIV34_02850) - 633775..634506 (+) 732 WP_139979490.1 PilN domain-containing protein -
  FIV34_RS02855 (FIV34_02855) pilO 634503..635150 (+) 648 WP_139979492.1 type 4a pilus biogenesis protein PilO -
  FIV34_RS02860 (FIV34_02860) - 635147..635674 (+) 528 WP_139979493.1 pilus assembly protein PilP -
  FIV34_RS02865 (FIV34_02865) - 635694..637925 (+) 2232 WP_139979495.1 type IV pilus secretin PilQ -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37882.51 Da        Isoelectric Point: 4.4882

>NTDB_id=369156 FIV34_RS02845 WP_139979488.1 632717..633775(+) (pilM) [Luteibacter pinisoli strain MAH-14]
MGLFTPKAAPLIGVDISSTAVKLLQLSEAGGRYRVEHYAVEPLPPNAVVEKNIVEVEAVGEAIRRALARSGAKVKHAAAA
VAGSAVITRIIPMSADLSEDDLEGQIQVEANQYIPYPIEEVSLDFEIVGPVRDNPEMNNILLAASRTENVDMRIAALDLG
GLTARVIDVEAFAMENAFAMVADQLAVSRDALVAVVDIGATMTTLAVLKNQRTIYSREQVFGGKQLTDEIMRRYGLSYEE
AGRAKRKGGLPESYEMEALEPFKESLVQQVSRLLQFFFAGSEYSRVDQVVLAGGCASIDGITEILEQQLGVPCVVANPLA
RMSLSSKVQAQTLAQDAPALMIAVGLAMRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=369156 FIV34_RS02845 WP_139979488.1 632717..633775(+) (pilM) [Luteibacter pinisoli strain MAH-14]
GTGGGGCTCTTTACACCGAAGGCGGCGCCGTTGATCGGTGTCGACATCAGCTCGACCGCGGTAAAGCTGTTGCAGCTCAG
TGAGGCAGGCGGGCGCTATCGCGTCGAGCATTATGCCGTTGAGCCGTTGCCGCCCAACGCCGTCGTCGAAAAGAACATCG
TCGAGGTCGAGGCCGTCGGCGAGGCAATCCGTCGTGCCCTGGCGCGCTCAGGGGCCAAGGTAAAGCATGCTGCGGCGGCC
GTTGCCGGCTCGGCGGTTATTACCCGGATCATTCCCATGTCGGCCGATCTCTCCGAGGATGACCTCGAGGGCCAGATCCA
GGTCGAAGCCAACCAGTACATTCCCTACCCGATCGAGGAAGTTAGCCTCGATTTCGAGATCGTGGGTCCGGTGCGGGACA
ACCCGGAGATGAACAACATCCTCCTGGCGGCGTCGCGCACCGAGAACGTGGACATGCGCATCGCCGCGCTAGACCTCGGC
GGCCTGACCGCCCGGGTGATCGACGTCGAGGCGTTCGCCATGGAGAACGCCTTCGCCATGGTGGCCGACCAGCTGGCCGT
CTCCCGCGACGCCCTCGTGGCCGTGGTGGACATCGGCGCCACCATGACCACCCTGGCCGTGCTGAAGAACCAGCGCACCA
TCTACTCCCGCGAGCAGGTCTTCGGCGGCAAGCAGCTCACCGACGAAATCATGCGCCGCTACGGTCTCTCCTACGAGGAA
GCGGGCCGCGCCAAGCGCAAGGGCGGCCTGCCCGAGTCGTACGAGATGGAGGCCCTCGAGCCGTTCAAGGAGTCGCTGGT
CCAGCAGGTCAGCCGCCTGCTCCAGTTCTTCTTCGCCGGCAGCGAGTACAGCCGCGTCGACCAGGTCGTCCTGGCCGGTG
GCTGCGCTTCGATCGACGGCATCACCGAGATCCTCGAGCAGCAGTTGGGCGTGCCCTGCGTGGTCGCCAATCCGCTGGCT
CGCATGTCCCTGTCCAGCAAGGTCCAGGCCCAGACCCTCGCCCAGGATGCCCCGGCGCTGATGATCGCCGTCGGCCTGGC
CATGCGGAGCTTCGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4Y5YZF9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Acinetobacter baumannii D1279779

52.047

97.159

0.506
  comM Acinetobacter baylyi ADP1

51.009

98.58

0.503
  comM Acinetobacter nosocomialis M2

51.754

97.159

0.503
  pilM Legionella pneumophila strain ERS1305867

41.076

100

0.412

Multiple sequence alignment