Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   FY147_RS05650 Genome accession   NZ_CP048502
Coordinates   1139064..1139648 (-) Length   194 a.a.
NCBI ID   WP_003502762.1    Uniprot ID   -
Organism   Agrobacterium tumefaciens strain Teh001     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1134064..1144648
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FY147_RS05635 (FY147_05595) - 1136819..1137448 (+) 630 WP_003502754.1 MarC family protein -
  FY147_RS05640 (FY147_05600) - 1137564..1138712 (+) 1149 WP_099085417.1 HPP family protein -
  FY147_RS05645 (FY147_05605) - 1138767..1139030 (-) 264 WP_223564850.1 hypothetical protein -
  FY147_RS05650 (FY147_05610) ssb 1139064..1139648 (-) 585 WP_003502762.1 single-stranded DNA-binding protein Machinery gene
  FY147_RS05655 (FY147_05615) uvrA 1139913..1142834 (+) 2922 WP_262513387.1 excinuclease ABC subunit UvrA Machinery gene
  FY147_RS05660 (FY147_05620) - 1142891..1143691 (+) 801 WP_262513388.1 DUF72 domain-containing protein -

Sequence

Protein


Download         Length: 194 a.a.        Molecular weight: 20667.59 Da        Isoelectric Point: 4.7391

>NTDB_id=369054 FY147_RS05650 WP_003502762.1 1139064..1139648(-) (ssb) [Agrobacterium tumefaciens strain Teh001]
MQLPVMMAGGQDDEMAGSVNKVILIGNVGADPEIRRTQDGRPIANLRIATSETWRDRNSGERKEKTEWHTVVVFNEGLCK
VVEQYVKKGAKLYIEGQLQTRKWQDQTGNDRYSTEIVLQGFNSTLTMLDGRGEGGGAARSGGGDFGGGNDYGSGGGSSYG
GGYDQQSSSRGGSARGGSQPAGGFSNDMDDDIPF

Nucleotide


Download         Length: 585 bp        

>NTDB_id=369054 FY147_RS05650 WP_003502762.1 1139064..1139648(-) (ssb) [Agrobacterium tumefaciens strain Teh001]
ATGCAATTGCCGGTCATGATGGCCGGCGGACAGGATGACGAGATGGCTGGTAGCGTAAACAAGGTAATTCTGATCGGGAA
CGTGGGCGCTGATCCCGAAATCCGCCGGACGCAGGATGGCCGCCCCATCGCCAACCTGCGCATCGCCACCTCGGAGACCT
GGCGTGACCGCAATAGCGGCGAGCGCAAGGAAAAGACCGAATGGCACACCGTCGTGGTTTTCAACGAAGGCCTGTGCAAG
GTCGTCGAGCAATATGTCAAGAAGGGCGCCAAGCTCTATATCGAAGGCCAGCTGCAGACCCGCAAATGGCAGGACCAGAC
CGGTAACGACCGTTACTCCACCGAAATCGTGCTGCAGGGCTTCAACTCCACGCTGACCATGCTTGACGGTCGCGGCGAGG
GCGGCGGTGCTGCCCGCAGTGGCGGTGGCGATTTCGGCGGCGGCAACGATTATGGCAGCGGCGGCGGCTCCAGCTATGGC
GGCGGTTACGACCAGCAGTCCTCGTCGCGCGGCGGCTCTGCCCGTGGCGGCAGCCAGCCCGCCGGCGGCTTCTCCAATGA
CATGGACGACGACATCCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(19-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

45.178

100

0.459
  ssb Vibrio cholerae strain A1552

49.153

91.237

0.448
  ssb Neisseria meningitidis MC58

39.665

92.268

0.366
  ssb Neisseria gonorrhoeae MS11

39.665

92.268

0.366

Multiple sequence alignment