Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   FY155_RS05755 Genome accession   NZ_CP048473
Coordinates   1143669..1144253 (-) Length   194 a.a.
NCBI ID   WP_003502762.1    Uniprot ID   -
Organism   Agrobacterium tumefaciens strain Yol002     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1138669..1149253
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FY155_RS05740 (FY155_05680) - 1141413..1142042 (+) 630 WP_003502754.1 MarC family protein -
  FY155_RS05745 (FY155_05685) - 1142169..1143317 (+) 1149 WP_129565184.1 HPP family protein -
  FY155_RS05750 (FY155_05690) - 1143372..1143635 (-) 264 WP_223564850.1 hypothetical protein -
  FY155_RS05755 (FY155_05695) ssb 1143669..1144253 (-) 585 WP_003502762.1 single-stranded DNA-binding protein Machinery gene
  FY155_RS05760 (FY155_05700) uvrA 1144518..1147439 (+) 2922 WP_003502764.1 excinuclease ABC subunit UvrA Machinery gene
  FY155_RS05765 (FY155_05705) - 1147496..1148296 (+) 801 WP_003502766.1 DUF72 domain-containing protein -

Sequence

Protein


Download         Length: 194 a.a.        Molecular weight: 20667.59 Da        Isoelectric Point: 4.7391

>NTDB_id=368868 FY155_RS05755 WP_003502762.1 1143669..1144253(-) (ssb) [Agrobacterium tumefaciens strain Yol002]
MQLPVMMAGGQDDEMAGSVNKVILIGNVGADPEIRRTQDGRPIANLRIATSETWRDRNSGERKEKTEWHTVVVFNEGLCK
VVEQYVKKGAKLYIEGQLQTRKWQDQTGNDRYSTEIVLQGFNSTLTMLDGRGEGGGAARSGGGDFGGGNDYGSGGGSSYG
GGYDQQSSSRGGSARGGSQPAGGFSNDMDDDIPF

Nucleotide


Download         Length: 585 bp        

>NTDB_id=368868 FY155_RS05755 WP_003502762.1 1143669..1144253(-) (ssb) [Agrobacterium tumefaciens strain Yol002]
ATGCAATTGCCGGTCATGATGGCCGGCGGACAGGATGACGAGATGGCTGGTAGCGTAAACAAGGTAATTCTGATCGGGAA
CGTGGGCGCTGATCCCGAAATCCGCCGGACGCAGGATGGCCGCCCCATCGCCAACCTGCGCATCGCCACCTCGGAGACCT
GGCGTGACCGCAATAGCGGCGAGCGCAAGGAAAAGACCGAATGGCACACCGTCGTGGTTTTCAACGAAGGCCTGTGCAAG
GTCGTCGAGCAATATGTCAAGAAGGGCGCCAAGCTCTATATCGAAGGCCAGCTGCAGACCCGCAAATGGCAGGACCAGAC
CGGTAACGACCGTTACTCCACCGAAATCGTGCTGCAGGGCTTCAACTCCACGCTGACCATGCTTGACGGTCGCGGCGAGG
GCGGCGGTGCTGCCCGCAGCGGCGGTGGCGATTTCGGCGGCGGCAACGATTATGGCAGCGGCGGCGGCTCCAGCTATGGC
GGCGGTTACGACCAGCAGTCCTCGTCGCGCGGCGGCTCTGCCCGTGGCGGCAGCCAGCCCGCCGGCGGCTTCTCCAATGA
CATGGACGACGACATCCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(19-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

45.178

100

0.459
  ssb Vibrio cholerae strain A1552

49.153

91.237

0.448
  ssb Neisseria meningitidis MC58

39.665

92.268

0.366
  ssb Neisseria gonorrhoeae MS11

39.665

92.268

0.366

Multiple sequence alignment