Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   SVI_RS17555 Genome accession   NC_014012
Coordinates   4223896..4224582 (-) Length   228 a.a.
NCBI ID   WP_013052990.1    Uniprot ID   D4ZCF2
Organism   Shewanella violacea DSS12     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4218896..4229582
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SVI_RS17530 (SVI_3721) - 4219364..4219792 (+) 429 WP_013052985.1 curlin -
  SVI_RS17535 (SVI_3722) - 4219806..4221314 (+) 1509 WP_013052986.1 curlin -
  SVI_RS17540 (SVI_3723) - 4221942..4222721 (-) 780 WP_013052987.1 CsgG/HfaB family protein -
  SVI_RS17545 (SVI_3724) - 4222725..4223126 (-) 402 WP_013052988.1 curli assembly protein CsgF -
  SVI_RS17550 (SVI_3725) - 4223163..4223504 (-) 342 WP_231847869.1 curli production assembly/transport protein CsgE -
  SVI_RS17555 (SVI_3726) ssb 4223896..4224582 (-) 687 WP_013052990.1 single-stranded DNA-binding protein Machinery gene
  SVI_RS17560 (SVI_3727) - 4224660..4226027 (-) 1368 WP_013052991.1 MFS transporter -
  SVI_RS17565 (SVI_3728) uvrA 4226346..4229183 (+) 2838 WP_013052992.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25053.31 Da        Isoelectric Point: 5.9285

>NTDB_id=36867 SVI_RS17555 WP_013052990.1 4223896..4224582(-) (ssb) [Shewanella violacea DSS12]
MASRGVNKVILVGNLGKDPEVRYMPNGNAVANFTVATSESWKDQQGQQQERTEWHNIVMYRRLAEVAGEYLKKGSKVYIE
GKLQTSKWQDQSTGQDRYKTEINANEMQMLDSRGQGGGQQGGFGQQQGQQQQSGGYQQAPQQQQGGYQGGQQQAAPQQQA
PQQAGYGQQQAAPQQQAPAYAPKPQQAPQQAAPKAAPQQRPAPQPQQAAPQQNFTPDLDDGWDDDIPF

Nucleotide


Download         Length: 687 bp        

>NTDB_id=36867 SVI_RS17555 WP_013052990.1 4223896..4224582(-) (ssb) [Shewanella violacea DSS12]
ATGGCCAGTCGTGGTGTCAATAAGGTAATTTTGGTCGGTAACTTAGGGAAAGACCCTGAAGTTCGTTACATGCCAAATGG
CAATGCCGTAGCCAACTTTACAGTGGCGACGAGTGAGTCTTGGAAAGACCAACAGGGTCAACAACAAGAGCGCACAGAGT
GGCACAACATCGTCATGTACCGTCGCTTAGCTGAAGTTGCCGGCGAATACCTGAAGAAAGGTTCTAAGGTTTATATCGAA
GGTAAATTGCAGACCAGTAAGTGGCAAGATCAGTCTACCGGTCAAGACCGTTATAAGACTGAGATCAATGCTAACGAGAT
GCAGATGCTCGATAGCCGTGGTCAAGGTGGCGGACAGCAAGGTGGCTTTGGTCAACAGCAAGGTCAGCAGCAACAATCTG
GTGGTTACCAGCAGGCGCCTCAACAGCAGCAAGGCGGCTATCAAGGTGGTCAGCAGCAGGCAGCACCGCAGCAGCAAGCT
CCTCAGCAAGCTGGTTATGGTCAGCAACAGGCTGCACCACAGCAGCAAGCTCCAGCTTATGCGCCTAAGCCTCAACAAGC
ACCACAGCAGGCGGCTCCTAAGGCTGCTCCACAGCAACGTCCTGCGCCTCAGCCACAACAGGCTGCTCCGCAACAGAACT
TTACACCGGATCTCGATGACGGTTGGGATGATGATATCCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB D4ZCF2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

48.498

100

0.496
  ssb Glaesserella parasuis strain SC1401

48

98.684

0.474
  ssb Neisseria gonorrhoeae MS11

45.133

99.123

0.447
  ssb Neisseria meningitidis MC58

43.348

100

0.443

Multiple sequence alignment