NTDB

Overview

Name	ysxA/radC	Type	Machinery gene
Locus tag	GZ067_RS01780	Genome accession	NZ_CP048431
Coordinates	340654..341340 (+)	Length	228 a.a.
NCBI ID	WP_000692886.1	Uniprot ID	-
Organism	Staphylococcus aureus strain SA1428
Function	homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 335654..346340

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GZ067_RS01765 (GZ067_01765)	-	335766..338396 (+)	2631	WP_000425363.1	valine--tRNA ligase	-
GZ067_RS01770 (GZ067_01770)	-	338409..339680 (+)	1272	WP_164025814.1	folylpolyglutamate synthase/dihydrofolate synthase family protein	-
GZ067_RS01775 (GZ067_01775)	-	339950..340657 (+)	708	WP_000261121.1	A24 family peptidase	-
GZ067_RS01780 (GZ067_01780)	ysxA/radC	340654..341340 (+)	687	WP_000692886.1	DNA repair protein RadC	Machinery gene
GZ067_RS01785 (GZ067_01785)	-	341408..341692 (+)	285	WP_000171859.1	hypothetical protein	-
GZ067_RS01790 (GZ067_01790)	-	341809..342006 (-)	198	WP_000025835.1	hypothetical protein	-
GZ067_RS01795 (GZ067_01795)	-	342166..342639 (+)	474	WP_001236734.1	DUF4930 family protein	-
GZ067_RS01800 (GZ067_01800)	-	342713..342832 (+)	120	WP_000840601.1	hypothetical protein	-
GZ067_RS01805 (GZ067_01805)	mreC	343032..343874 (+)	843	WP_164025817.1	rod shape-determining protein MreC	-
GZ067_RS01810 (GZ067_01810)	mreD	343874..344404 (+)	531	WP_001259925.1	rod shape-determining protein MreD	-
GZ067_RS01815 (GZ067_01815)	rplU	344766..345074 (+)	309	WP_000457386.1	50S ribosomal protein L21	-
GZ067_RS01820 (GZ067_01820)	-	345080..345400 (+)	321	WP_000633692.1	ribosomal-processing cysteine protease Prp	-
GZ067_RS01825 (GZ067_01825)	rpmA	345412..345696 (+)	285	WP_000916187.1	50S ribosomal protein L27	-

Sequence

Protein

Download Length: 228 a.a. Molecular weight: 25311.24 Da Isoelectric Point: 6.7572

                                >NTDB_id=368659 GZ067_RS01780 WP_000692886.1 340654..341340(+) (ysxA/radC) [Staphylococcus aureus strain SA1428]

MKIKEMVTSEMPRERLLSHGAKSLSNTELLAILINTGRKGFSSIDISNELLKSASNLNELKKSSINDLIQVKGIGLQKAI

TLKAAFELGERMGRRAENNRIKITQPSDVADYMIPTMKDLTQEHFVILLLNSKNVVIKETCVFKGTLNSSIVHPREIFSI

AVRENANAIIAVHNHPSGDVTPSQEDIITTMRLKECGLILGIDLLDHIIIGDNRFTSLVEAGYFDEND

Nucleotide

Download Length: 687 bp

                                >NTDB_id=368659 GZ067_RS01780 WP_000692886.1 340654..341340(+) (ysxA/radC) [Staphylococcus aureus strain SA1428]

TTGAAAATTAAAGAAATGGTAACTTCAGAAATGCCAAGAGAACGTTTGTTAAGCCATGGTGCAAAAAGTCTTTCGAATAC

AGAATTATTAGCTATATTAATTAACACCGGAAGAAAAGGATTCTCGAGCATAGACATTAGTAATGAACTGCTTAAATCTG

CTTCGAATCTGAATGAATTGAAAAAATCTTCAATTAACGATTTGATACAAGTTAAAGGGATTGGATTACAAAAAGCAATT

ACTTTAAAAGCAGCATTTGAGCTAGGGGAAAGGATGGGGAGAAGAGCTGAAAATAATCGTATAAAAATAACGCAACCAAG

TGATGTTGCTGATTATATGATTCCAACAATGAAAGATTTAACACAAGAACATTTTGTCATTTTATTGTTAAATTCAAAAA

ATGTAGTGATTAAAGAAACCTGTGTTTTTAAAGGTACATTAAATAGTTCGATTGTACATCCACGTGAAATTTTTAGTATT

GCGGTGAGAGAAAATGCCAATGCAATTATCGCAGTTCATAATCATCCATCCGGTGATGTAACGCCCTCACAAGAAGATAT

CATAACAACAATGAGGTTGAAGGAGTGTGGTTTGATTTTAGGGATAGATTTGTTGGATCATATTATAATCGGTGATAATA

GATTTACCAGTCTTGTAGAAGCGGGTTACTTTGATGAAAATGATTGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(103-222)

UPF0758 N-terminal (UPF0758_N)

(3-80)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
ysxA/radC	Bacillus subtilis subsp. subtilis str. 168	52.679	98.246	0.518
radC	Streptococcus pneumoniae TIGR4	41.038	92.982	0.382
radC	Streptococcus gordonii str. Challis substr. CH1	39.908	95.614	0.382
radC	Streptococcus pneumoniae R6	40.566	92.982	0.377
radC	Streptococcus pneumoniae D39	40.566	92.982	0.377

Detailed information NTG0368659