Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   FH041_RS19990 Genome accession   NZ_CP040930
Coordinates   4359332..4359883 (+) Length   183 a.a.
NCBI ID   WP_023534972.1    Uniprot ID   A0A0S4IAC6
Organism   Pseudomonas sp. SWI7     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4354332..4364883
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FH041_RS19975 (FH041_19975) bfr 4354404..4354868 (+) 465 WP_023534970.1 bacterioferritin -
  FH041_RS19980 (FH041_19980) uvrA 4354964..4357798 (-) 2835 WP_028687678.1 excinuclease ABC subunit UvrA -
  FH041_RS19985 (FH041_19985) - 4357928..4359322 (+) 1395 WP_023534992.1 MFS transporter -
  FH041_RS19990 (FH041_19990) ssb 4359332..4359883 (+) 552 WP_023534972.1 single-stranded DNA-binding protein Machinery gene
  FH041_RS19995 (FH041_19995) - 4360101..4360547 (+) 447 WP_050438003.1 hypothetical protein -
  FH041_RS20000 (FH041_20000) - 4360552..4360905 (-) 354 Protein_3921 transposase -
  FH041_RS20005 (FH041_20005) fdnG 4361071..4364139 (+) 3069 WP_140174981.1 formate dehydrogenase-N subunit alpha -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 20361.41 Da        Isoelectric Point: 5.9286

>NTDB_id=368385 FH041_RS19990 WP_023534972.1 4359332..4359883(+) (ssb) [Pseudomonas sp. SWI7]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQSGQKVERTEWHRVSLFGKVAEIAGEYLRKGSQCYIE
GKLQTREWEKDGIKRYTTEIIVDINGTMQLLGGRPQNQQGGGDPYNQGGGNNYNQGGGQQQQYNQQPARQQAPRPQQQQR
PAPQQPAPQPAADFDSFDDDIPF

Nucleotide


Download         Length: 552 bp        

>NTDB_id=368385 FH041_RS19990 WP_023534972.1 4359332..4359883(+) (ssb) [Pseudomonas sp. SWI7]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTCGGTACCTGTGGCCAGGATCCCGAAGTCCGCTACCTGCCCAACGGTAA
TGCCGTGACCAACCTGAGCCTGGCAACCAGCGAGCAATGGACCGACAAGCAGTCGGGCCAGAAGGTCGAGCGTACCGAAT
GGCACCGTGTGTCGCTGTTCGGCAAGGTTGCCGAGATTGCCGGCGAGTACCTGCGCAAAGGTTCGCAGTGCTACATCGAA
GGCAAGCTGCAGACCCGTGAGTGGGAAAAAGACGGCATCAAGCGCTACACCACTGAAATCATCGTTGACATCAACGGCAC
CATGCAGCTGCTGGGCGGCCGTCCGCAGAACCAGCAAGGCGGCGGCGACCCGTACAACCAGGGTGGTGGTAACAACTACA
ACCAAGGTGGCGGTCAGCAGCAACAGTACAACCAGCAACCTGCGCGCCAGCAGGCCCCGCGCCCGCAACAGCAACAGCGC
CCGGCGCCGCAGCAGCCAGCGCCGCAACCGGCGGCTGACTTCGACAGCTTTGATGATGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0S4IAC6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

57.297

100

0.579
  ssb Glaesserella parasuis strain SC1401

49.206

100

0.508
  ssb Neisseria gonorrhoeae MS11

48.387

100

0.492
  ssb Neisseria meningitidis MC58

47.222

98.361

0.464

Multiple sequence alignment