Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   E8E07_RS01055 Genome accession   NZ_CP040911
Coordinates   237002..237589 (+) Length   195 a.a.
NCBI ID   WP_005066890.1    Uniprot ID   -
Organism   Acinetobacter pittii strain AB17H194     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 232002..242589
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E8E07_RS01030 - 232078..232878 (-) 801 WP_086399931.1 SDR family NAD(P)-dependent oxidoreductase -
  E8E07_RS01035 - 232982..233353 (-) 372 WP_068929809.1 MerR family transcriptional regulator -
  E8E07_RS01040 tenA 233420..234094 (-) 675 WP_086399932.1 thiaminase II -
  E8E07_RS01045 - 234357..235439 (+) 1083 WP_005066886.1 DUF475 domain-containing protein -
  E8E07_RS01050 yajR 235586..236950 (+) 1365 WP_086399933.1 MFS transporter -
  E8E07_RS01055 ssb 237002..237589 (+) 588 WP_005066890.1 single-stranded DNA-binding protein Machinery gene
  E8E07_RS01060 - 237631..237954 (-) 324 WP_002117414.1 AzlD domain-containing protein -
  E8E07_RS01065 - 237951..238646 (-) 696 WP_086399934.1 AzlC family ABC transporter permease -
  E8E07_RS01070 ydcN 238715..239263 (+) 549 WP_002117406.1 helix-turn-helix domain-containing protein -
  E8E07_RS01075 - 239569..241011 (+) 1443 WP_002117418.1 amino acid permease -
  E8E07_RS01080 - 241076..242575 (-) 1500 WP_017399625.1 PLP-dependent aminotransferase family protein -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 21223.01 Da        Isoelectric Point: 6.4822

>NTDB_id=368232 E8E07_RS01055 WP_005066890.1 237002..237589(+) (ssb) [Acinetobacter pittii strain AB17H194]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSEAWTDKNTGERKEQTEWHRIVLHNRLGEIAQQFLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGDQMQMLDARQQGEQGFAGGNDFNQPRFNAPQQGGNGYQNNNNQGGGYGQNSGGYGNQG
GFGNGGSNPQAGGFAPKAPQQPASAPADLDDDLPF

Nucleotide


Download         Length: 588 bp        

>NTDB_id=368232 E8E07_RS01055 WP_005066890.1 237002..237589(+) (ssb) [Acinetobacter pittii strain AB17H194]
ATGCGTGGTGTAAATAAGGTTATTTTGGTTGGTACTTTGGGTCGTGATCCTGAAACAAAAACTTTTCCAAATGGGGGCTC
GTTGACCCAATTTTCAATCGCGACAAGTGAAGCTTGGACTGATAAAAATACTGGTGAACGTAAAGAACAAACAGAATGGC
ACCGTATTGTTTTGCATAACCGTTTAGGGGAAATTGCTCAGCAGTTCTTGCGTAAAGGTTCTAAGGTTTATATTGAAGGT
TCATTACGTACACGTCAGTGGACAGACCAAAATGGCCAAGAGCGTTACACTACAGAAATCCGTGGCGACCAGATGCAAAT
GTTAGATGCTCGTCAACAAGGTGAACAAGGTTTCGCTGGCGGTAATGATTTTAACCAACCACGTTTTAACGCACCTCAAC
AAGGTGGTAATGGTTATCAAAATAATAACAACCAAGGTGGCGGCTATGGCCAAAACAGCGGTGGTTATGGTAACCAAGGT
GGTTTCGGTAATGGTGGAAGCAACCCTCAAGCGGGTGGTTTTGCGCCTAAAGCTCCGCAACAACCGGCTTCTGCACCAGC
TGATTTAGACGACGATTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

52.475

100

0.544
  ssb Vibrio cholerae strain A1552

44.5

100

0.456
  ssb Neisseria meningitidis MC58

39.394

100

0.4
  ssb Neisseria gonorrhoeae MS11

37.879

100

0.385

Multiple sequence alignment