Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   FHQ07_RS12095 Genome accession   NZ_CP040871
Coordinates   2562267..2562773 (+) Length   168 a.a.
NCBI ID   WP_139717046.1    Uniprot ID   A0A5B7ZTZ6
Organism   Thermomonas aquatica strain SY21     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2557267..2567773
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FHQ07_RS12075 (FHQ07_12075) murL 2557497..2558846 (+) 1350 WP_139718062.1 UDP-N-acetyl-alpha-D-muramoyl-L-alanyl-L- glutamate epimerase -
  FHQ07_RS12080 (FHQ07_12080) murD 2558827..2560236 (+) 1410 WP_139717043.1 UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase -
  FHQ07_RS12085 (FHQ07_12085) - 2560296..2561093 (+) 798 WP_139717044.1 dienelactone hydrolase family protein -
  FHQ07_RS12090 (FHQ07_12090) - 2561094..2562095 (-) 1002 WP_139717045.1 polyprenyl synthetase family protein -
  FHQ07_RS12095 (FHQ07_12095) ssb 2562267..2562773 (+) 507 WP_139717046.1 single-stranded DNA-binding protein Machinery gene
  FHQ07_RS12100 (FHQ07_12100) rfbB 2562800..2563855 (+) 1056 WP_139717047.1 dTDP-glucose 4,6-dehydratase -
  FHQ07_RS12105 (FHQ07_12105) rfbA 2563852..2564745 (+) 894 WP_139717048.1 glucose-1-phosphate thymidylyltransferase RfbA -
  FHQ07_RS12110 (FHQ07_12110) rfbC 2564756..2565316 (+) 561 WP_139717049.1 dTDP-4-dehydrorhamnose 3,5-epimerase -
  FHQ07_RS12115 (FHQ07_12115) rfbD 2565313..2566203 (+) 891 WP_139717050.1 dTDP-4-dehydrorhamnose reductase -
  FHQ07_RS12120 (FHQ07_12120) - 2566207..2567265 (-) 1059 WP_139717051.1 acyltransferase -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18200.08 Da        Isoelectric Point: 6.4873

>NTDB_id=367759 FHQ07_RS12095 WP_139717046.1 2562267..2562773(+) (ssb) [Thermomonas aquatica strain SY21]
MARGVNKVILLGNLGNDPDVKYTQGGMAIATLSVATTYSRKDKDGQFQEKTEWHRVKLFGKTAEVAGEYLKKGRQVYIEG
RIEYGSYEKDGVKHYTTDIIGEDMQMLGGGDGQRGGGEGGGYQQRSGGGGNYGSGGDRQQRAPAQRRDPAAAKPANFDDV
PFDDDIPF

Nucleotide


Download         Length: 507 bp        

>NTDB_id=367759 FHQ07_RS12095 WP_139717046.1 2562267..2562773(+) (ssb) [Thermomonas aquatica strain SY21]
ATGGCACGCGGCGTCAACAAGGTGATCCTGCTCGGCAACCTGGGCAACGACCCGGACGTGAAGTACACCCAGGGCGGCAT
GGCCATCGCCACGCTGAGCGTGGCCACGACCTACTCGCGCAAGGACAAGGACGGCCAGTTCCAGGAAAAGACCGAGTGGC
ACCGGGTCAAGCTGTTCGGCAAGACCGCGGAAGTCGCCGGCGAATACCTGAAGAAGGGCCGCCAGGTCTACATCGAGGGC
CGCATCGAGTACGGCTCGTACGAGAAGGACGGCGTCAAGCACTACACCACCGACATCATCGGCGAGGACATGCAGATGCT
CGGCGGCGGCGATGGCCAGCGCGGCGGCGGCGAAGGCGGCGGCTACCAGCAGCGCAGCGGCGGTGGCGGCAATTACGGCA
GCGGCGGCGATCGCCAGCAGCGTGCCCCGGCGCAGCGTCGCGACCCGGCAGCGGCCAAGCCGGCCAATTTCGACGACGTG
CCGTTCGACGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5B7ZTZ6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

45.109

100

0.494
  ssb Vibrio cholerae strain A1552

44.318

100

0.464
  ssb Neisseria meningitidis MC58

39.56

100

0.429
  ssb Neisseria gonorrhoeae MS11

39.56

100

0.429

Multiple sequence alignment