Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | NHAL_RS18555 | Genome accession | NC_013960 |
| Coordinates | 3944676..3945146 (+) | Length | 156 a.a. |
| NCBI ID | WP_013034689.1 | Uniprot ID | D5C3D3 |
| Organism | Nitrosococcus halophilus Nc 4 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 3939676..3950146
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NHAL_RS18545 (Nhal_3823) | uvrA | 3940289..3943156 (-) | 2868 | WP_013034687.1 | excinuclease ABC subunit UvrA | - |
| NHAL_RS18550 (Nhal_3824) | - | 3943219..3944637 (+) | 1419 | WP_013034688.1 | MFS transporter | - |
| NHAL_RS18555 (Nhal_3825) | ssb | 3944676..3945146 (+) | 471 | WP_013034689.1 | single-stranded DNA-binding protein | Machinery gene |
| NHAL_RS19985 (Nhal_3827) | - | 3945514..3946206 (+) | 693 | WP_238985528.1 | FRG domain-containing protein | - |
| NHAL_RS18570 (Nhal_3828) | - | 3946365..3947165 (-) | 801 | WP_013034691.1 | IS5 family transposase | - |
| NHAL_RS18575 (Nhal_3830) | - | 3947342..3947689 (+) | 348 | WP_013034692.1 | CopG family antitoxin | - |
| NHAL_RS18580 (Nhal_3831) | - | 3947762..3947983 (-) | 222 | WP_041355199.1 | hypothetical protein | - |
| NHAL_RS18585 (Nhal_3832) | - | 3948366..3950063 (-) | 1698 | WP_013034693.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 156 a.a. Molecular weight: 17152.90 Da Isoelectric Point: 4.8158
>NTDB_id=36772 NHAL_RS18555 WP_013034689.1 3944676..3945146(+) (ssb) [Nitrosococcus halophilus Nc 4]
MASRGVNKVILIGNLGRDPEVRYTASGGAIANITLATSETWKDKTTGEQQERTEWHRVVFFGRLGEIAGEYLKKGSKIYV
EGRLQTRKWQGQDGQDRYTTEIVANEMQMLDRATGGSAPYNNDMNQGSAPGPSSPPSRPSPPPSSSDDDFEDDIPF
MASRGVNKVILIGNLGRDPEVRYTASGGAIANITLATSETWKDKTTGEQQERTEWHRVVFFGRLGEIAGEYLKKGSKIYV
EGRLQTRKWQGQDGQDRYTTEIVANEMQMLDRATGGSAPYNNDMNQGSAPGPSSPPSRPSPPPSSSDDDFEDDIPF
Nucleotide
Download Length: 471 bp
>NTDB_id=36772 NHAL_RS18555 WP_013034689.1 3944676..3945146(+) (ssb) [Nitrosococcus halophilus Nc 4]
GTGGCATCAAGAGGCGTTAACAAAGTCATTCTGATAGGTAACCTGGGACGGGATCCGGAAGTCCGCTATACCGCCAGTGG
CGGGGCCATCGCCAATATCACCCTGGCCACCTCGGAGACCTGGAAAGACAAAACCACCGGCGAGCAACAGGAACGCACCG
AATGGCACCGGGTAGTGTTCTTCGGCCGCCTGGGGGAAATTGCCGGCGAATACCTGAAAAAAGGCTCCAAGATCTACGTG
GAAGGCCGCCTCCAAACCCGCAAGTGGCAAGGCCAGGACGGCCAGGACCGCTATACCACCGAGATTGTCGCCAACGAGAT
GCAAATGCTGGACCGGGCCACAGGCGGCAGCGCCCCTTATAACAACGACATGAACCAAGGCTCGGCCCCAGGCCCCTCAA
GTCCTCCCTCCCGGCCTTCACCTCCCCCGTCCTCAAGCGATGATGATTTTGAGGATGACATACCGTTCTGA
GTGGCATCAAGAGGCGTTAACAAAGTCATTCTGATAGGTAACCTGGGACGGGATCCGGAAGTCCGCTATACCGCCAGTGG
CGGGGCCATCGCCAATATCACCCTGGCCACCTCGGAGACCTGGAAAGACAAAACCACCGGCGAGCAACAGGAACGCACCG
AATGGCACCGGGTAGTGTTCTTCGGCCGCCTGGGGGAAATTGCCGGCGAATACCTGAAAAAAGGCTCCAAGATCTACGTG
GAAGGCCGCCTCCAAACCCGCAAGTGGCAAGGCCAGGACGGCCAGGACCGCTATACCACCGAGATTGTCGCCAACGAGAT
GCAAATGCTGGACCGGGCCACAGGCGGCAGCGCCCCTTATAACAACGACATGAACCAAGGCTCGGCCCCAGGCCCCTCAA
GTCCTCCCTCCCGGCCTTCACCTCCCCCGTCCTCAAGCGATGATGATTTTGAGGATGACATACCGTTCTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
58.192 |
100 |
0.66 |
| ssb | Glaesserella parasuis strain SC1401 |
50.276 |
100 |
0.583 |
| ssb | Neisseria gonorrhoeae MS11 |
46.243 |
100 |
0.513 |
| ssb | Neisseria meningitidis MC58 |
46.243 |
100 |
0.513 |