Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   NHAL_RS16235 Genome accession   NC_013960
Coordinates   3445595..3445981 (+) Length   128 a.a.
NCBI ID   WP_041355116.1    Uniprot ID   -
Organism   Nitrosococcus halophilus Nc 4     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3440595..3450981
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NHAL_RS20690 (Nhal_3338) - 3440625..3440626 (-) 2 WP_013034225.1 IS1 family transposase -
  NHAL_RS16215 (Nhal_3340) - 3441917..3442546 (-) 630 WP_013034226.1 hypothetical protein -
  NHAL_RS16220 (Nhal_3341) - 3442539..3443084 (-) 546 WP_013034227.1 GTP-binding protein -
  NHAL_RS16225 (Nhal_3342) - 3443124..3444248 (-) 1125 WP_238985374.1 hypothetical protein -
  NHAL_RS16230 (Nhal_3343) - 3444344..3445030 (-) 687 WP_157862588.1 FimV family protein -
  NHAL_RS16235 (Nhal_3344) pilG 3445595..3445981 (+) 387 WP_041355116.1 twitching motility response regulator PilG Regulator
  NHAL_RS16240 (Nhal_3345) - 3446068..3446433 (+) 366 WP_013034231.1 response regulator transcription factor -
  NHAL_RS16245 (Nhal_3346) - 3446446..3446994 (+) 549 WP_013034232.1 chemotaxis protein CheW -
  NHAL_RS16250 (Nhal_3347) - 3447078..3448691 (+) 1614 WP_013034233.1 methyl-accepting chemotaxis protein -
  NHAL_RS16255 (Nhal_3348) - 3448711..3449565 (+) 855 WP_013034234.1 CheR family methyltransferase -

Sequence

Protein


Download         Length: 128 a.a.        Molecular weight: 14517.96 Da        Isoelectric Point: 7.7266

>NTDB_id=36767 NHAL_RS16235 WP_041355116.1 3445595..3445981(+) (pilG) [Nitrosococcus halophilus Nc 4]
MEKLEFNGLKVMIIDDSKTIRKTAETLLKKVGCEVVTAEDGFEALPKINQYHPDIIFIDIMMPRLDGYQTCTLIKHNTAF
KKTPVIMLSSKDGLFDRARGRIVGCDQYLTKPFTREELLGAISSHCNH

Nucleotide


Download         Length: 387 bp        

>NTDB_id=36767 NHAL_RS16235 WP_041355116.1 3445595..3445981(+) (pilG) [Nitrosococcus halophilus Nc 4]
ATGGAAAAGCTCGAATTTAATGGTCTTAAAGTCATGATTATCGATGATAGTAAGACTATTCGAAAAACAGCGGAAACCTT
ACTTAAAAAAGTTGGCTGCGAGGTAGTCACCGCAGAAGACGGCTTCGAAGCTCTTCCTAAAATCAACCAATACCATCCAG
ATATCATATTCATAGACATTATGATGCCGAGATTAGATGGGTATCAAACCTGTACCTTGATAAAACACAACACTGCATTC
AAGAAAACTCCAGTGATTATGCTCTCCAGCAAAGATGGTTTGTTTGACCGAGCCCGTGGACGAATCGTTGGCTGCGATCA
GTATTTAACAAAACCCTTTACTCGTGAAGAGCTCTTAGGTGCCATTTCAAGCCACTGCAATCATTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(11-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

68.852

95.313

0.656
  pilH Synechocystis sp. PCC 6803

43.75

87.5

0.383
  vicR Streptococcus mutans UA159

41.026

91.406

0.375
  chpA Acinetobacter baumannii strain A118

41.228

89.063

0.367

Multiple sequence alignment