Detailed information    

insolico Bioinformatically predicted

Overview

Name   ysxA/radC   Type   Machinery gene
Locus tag   SAOV_RS08610 Genome accession   NC_017337
Coordinates   1719970..1720656 (-) Length   228 a.a.
NCBI ID   WP_000692862.1    Uniprot ID   -
Organism   Staphylococcus aureus subsp. aureus ED133     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1714970..1725656
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SAOV_RS08570 (SAOV_1642) rpmA 1715558..1715842 (-) 285 WP_000916187.1 50S ribosomal protein L27 -
  SAOV_RS08575 (SAOV_1643) - 1715854..1716174 (-) 321 WP_000633692.1 ribosomal-processing cysteine protease Prp -
  SAOV_RS08580 (SAOV_1644) rplU 1716180..1716488 (-) 309 WP_000457386.1 50S ribosomal protein L21 -
  SAOV_RS08585 (SAOV_1645) mreD 1716907..1717437 (-) 531 WP_001259925.1 rod shape-determining protein MreD -
  SAOV_RS08590 (SAOV_1646) mreC 1717437..1718279 (-) 843 WP_000911034.1 rod shape-determining protein MreC -
  SAOV_RS08595 - 1718478..1718597 (-) 120 WP_000840603.1 hypothetical protein -
  SAOV_RS08600 (SAOV_1647) - 1718671..1719144 (-) 474 WP_001236737.1 DUF4930 family protein -
  SAOV_RS14960 - 1719304..1719501 (+) 198 WP_000025835.1 hypothetical protein -
  SAOV_RS08605 (SAOV_1648) - 1719618..1719902 (-) 285 WP_000171859.1 hypothetical protein -
  SAOV_RS08610 (SAOV_1649) ysxA/radC 1719970..1720656 (-) 687 WP_000692862.1 RadC family protein Machinery gene
  SAOV_RS08615 (SAOV_1650) - 1720653..1721360 (-) 708 WP_000261114.1 prepilin peptidase -
  SAOV_RS08625 (SAOV_1651) - 1721622..1722893 (-) 1272 WP_001108337.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -
  SAOV_RS08630 (SAOV_1652) - 1722906..1725536 (-) 2631 WP_000425345.1 valine--tRNA ligase -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25309.26 Da        Isoelectric Point: 6.7572

>NTDB_id=36765 SAOV_RS08610 WP_000692862.1 1719970..1720656(-) (ysxA/radC) [Staphylococcus aureus subsp. aureus ED133]
MKIKEMVTSEMPRERLLSHGAKSLSNIELLAILINTGRKGFSSIDISNELLKSASNLNELKKSSINDLIQVKGIGLQKAI
TLKAAFELGERMGRRAENNRIKITQPSDVADYMIPTMKDLTQEHFVILLLNSKNVVIKESCVFKGTLNSSIVHPREIFSI
AVRENANAIIAVHNHPSGDVTPSQEDIITTMRLKECGLILGIDLLDHIIIGDNRFTSLVEAGYFDEND

Nucleotide


Download         Length: 687 bp        

>NTDB_id=36765 SAOV_RS08610 WP_000692862.1 1719970..1720656(-) (ysxA/radC) [Staphylococcus aureus subsp. aureus ED133]
TTGAAAATTAAAGAAATGGTAACTTCAGAAATGCCAAGAGAACGTTTGTTAAGCCATGGTGCAAAAAGTCTTTCGAATAT
AGAATTATTAGCTATATTAATTAACACCGGAAGAAAAGGATTCTCGAGTATAGACATTAGTAATGAACTGCTTAAATCTG
CTTCGAATCTGAATGAATTGAAAAAATCTTCAATTAACGATTTGATACAAGTTAAAGGGATTGGATTACAAAAAGCAATT
ACATTAAAAGCAGCATTTGAGTTAGGGGAAAGGATGGGGAGAAGAGCTGAAAATAATCGTATAAAAATAACGCAACCAAG
TGATGTTGCTGATTATATGATTCCAACAATGAAAGATTTAACACAAGAACATTTTGTCATTTTATTGTTAAATTCAAAAA
ATGTAGTGATTAAAGAAAGCTGTGTTTTTAAAGGTACATTAAATAGTTCAATTGTACATCCACGCGAAATTTTTAGTATT
GCGGTGAGAGAAAATGCCAATGCAATCATCGCAGTTCATAATCATCCATCCGGTGATGTAACGCCCTCACAAGAAGATAT
CATAACAACAATGAGGTTGAAGGAGTGTGGTTTGATTTTAGGGATAGATTTATTAGATCATATTATAATCGGTGATAATA
GATTTACGAGTCTTGTAGAAGCGGGTTACTTTGATGAAAATGATTGA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(3-80)

RadC-like JAB domain (RadC)

(103-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

52.679

98.246

0.518
  radC Streptococcus pneumoniae TIGR4

41.038

92.982

0.382
  radC Streptococcus gordonii str. Challis substr. CH1

39.908

95.614

0.382
  radC Streptococcus pneumoniae R6

40.566

92.982

0.377
  radC Streptococcus pneumoniae D39

40.566

92.982

0.377

Multiple sequence alignment