Detailed information NTG0036763

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: SAOV_RS08550
• Genome accession: NC_017337
• Coordinates: 1711395..1712399 (-)
• Length: 334 a.a.
• NCBI ID: WP_001005767.1
• Uniprot ID: Q6GG63
• Organism: Staphylococcus aureus subsp. aureus ED133
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1706395..1717399

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SAOV_RS08535 (SAOV_1635)	yajC	1708927..1709187 (-)	261	WP_001160682.1	preprotein translocase subunit YajC	-
SAOV_RS08540 (SAOV_1636)	tgt	1709206..1710345 (-)	1140	WP_001112045.1	tRNA guanosine(34) transglycosylase Tgt	-
SAOV_RS08545 (SAOV_1637)	queA	1710368..1711393 (-)	1026	WP_001019175.1	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	-
SAOV_RS08550 (SAOV_1638)	ruvB	1711395..1712399 (-)	1005	WP_001005767.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
SAOV_RS08555 (SAOV_1639)	ruvA	1712431..1713033 (-)	603	WP_000271547.1	Holliday junction branch migration protein RuvA	Machinery gene
SAOV_RS08560 (SAOV_1640)	-	1713047..1713502 (-)	456	WP_000368905.1	ACT domain-containing protein	-
SAOV_RS08565 (SAOV_1641)	obgE	1713515..1714807 (-)	1293	WP_000496098.1	GTPase ObgE	-
SAOV_RS08570 (SAOV_1642)	rpmA	1715558..1715842 (-)	285	WP_000916187.1	50S ribosomal protein L27	-
SAOV_RS08575 (SAOV_1643)	-	1715854..1716174 (-)	321	WP_000633692.1	ribosomal-processing cysteine protease Prp	-
SAOV_RS08580 (SAOV_1644)	rplU	1716180..1716488 (-)	309	WP_000457386.1	50S ribosomal protein L21	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 37718.00 Da
• Isoelectric Point: 5.0865

>NTDB_id=36763 SAOV_RS08550 WP_001005767.1 1711395..1712399(-) (ruvB) [Staphylococcus aureus subsp. aureus ED133]
MNERMVDQSMHSEETDFELSLRPTRLRQYIGQNSIKSNLEVFIKAAKLRHEPLDHVLLFGPPGLGKTTLSNIIANEMEVN
IRTVSGPSLERPGDLAAILSGLQPGDVLFIDEIHRLSSVVEEVLYPAMEDFFLDIIIGKGDEARSIRIDLPPFTLVGATT
RAGSLTGPLRDRFGVHLRLEYYNESDLKEIIIRTAEVLGTGIDEESAIELAKRSRGTPRVANRLLKRVRDFQQVNEDEQI
YIETTKHALGLLQVDQHGLDYIDHKMMNCIIKQYNGGPVGLDTIAVTIGEERITIEDVYEPFLIQKGFLERTPRGRKATP
LAYEHFAKSNEERE

Nucleotide

• Length: 1005 bp

>NTDB_id=36763 SAOV_RS08550 WP_001005767.1 1711395..1712399(-) (ruvB) [Staphylococcus aureus subsp. aureus ED133]
ATGAATGAGCGTATGGTTGATCAATCAATGCATAGTGAAGAAACTGATTTCGAATTGTCGCTTAGACCTACGAGATTACG
ACAATATATTGGTCAAAATTCAATAAAAAGTAATTTAGAAGTATTTATTAAAGCGGCTAAACTTCGTCATGAACCATTAG
ATCATGTATTGCTTTTTGGCCCCCCCGGATTAGGTAAGACAACATTATCTAATATCATTGCCAATGAAATGGAAGTTAAT
ATACGTACAGTATCAGGGCCTTCATTAGAAAGACCTGGTGATTTGGCTGCAATTTTATCAGGGCTTCAACCTGGAGATGT
TTTGTTTATTGATGAAATACACAGACTGAGTAGTGTTGTTGAAGAAGTGTTATACCCTGCAATGGAAGATTTCTTTTTAG
ATATTATCATTGGTAAAGGCGATGAGGCTAGAAGTATCCGAATCGACTTACCTCCATTCACTTTGGTAGGTGCAACAACG
CGAGCTGGTAGCTTAACAGGTCCACTAAGGGATCGATTTGGTGTGCACTTAAGATTAGAATATTATAATGAATCAGATTT
AAAAGAAATCATTATTAGAACAGCTGAGGTTTTAGGCACAGGAATTGATGAAGAAAGTGCCATTGAACTTGCTAAACGTT
CTAGAGGGACTCCAAGAGTAGCAAATCGACTATTGAAACGGGTAAGAGACTTCCAGCAAGTGAATGAAGATGAACAAATA
TACATTGAAACAACAAAGCACGCATTAGGTTTACTTCAAGTTGATCAACACGGACTAGATTACATTGATCATAAAATGAT
GAACTGTATTATTAAGCAGTATAATGGTGGACCTGTTGGTTTAGATACGATTGCCGTAACAATTGGCGAAGAACGTATTA
CAATTGAGGACGTTTATGAGCCATTTCTTATTCAGAAAGGCTTTTTAGAACGTACGCCACGTGGCAGAAAAGCAACACCA
TTAGCTTATGAACATTTTGCAAAGTCGAATGAGGAGAGAGAATAA

Domains

Predicted by InterProScan.

• RuvB AAA lid domain (AAA_lid_4) (182-255)

• RuvB C-terminal winged helix domain (WHD_RuvB) (257-326)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (21-179)

3D structure

• AlphaFold DB: Q6GG63

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Bacillus subtilis subsp. subtilis str. 168	65.951	97.605	0.644
ruvB	Streptococcus pneumoniae TIGR4	58.182	98.802	0.575
ruvB	Streptococcus pneumoniae R6	57.879	98.802	0.572
ruvB	Streptococcus pneumoniae D39	57.879	98.802	0.572
ruvB	Helicobacter pylori 26695	56.481	97.006	0.548
ruvB	Synechocystis sp. PCC 6803	53.75	95.808	0.515