Detailed information NTG0036761

Bioinformatically predicted

Overview

• Name: pilU
• Type: Machinery gene
• Locus tag: NHAL_RS09800
• Genome accession: NC_013960
• Coordinates: 2085385..2086557 (-)
• Length: 390 a.a.
• NCBI ID: WP_013032989.1
• Uniprot ID: -
• Organism: Nitrosococcus halophilus Nc 4
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2080385..2091557

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NHAL_RS09785 (Nhal_2013)	-	2083062..2083505 (-)	444	WP_013032986.1	HU family DNA-binding protein	-
NHAL_RS09790 (Nhal_2014)	-	2084201..2084677 (-)	477	WP_013032987.1	hypothetical protein	-
NHAL_RS09795 (Nhal_2015)	-	2084843..2085166 (-)	324	WP_013032988.1	DMT family transporter	-
NHAL_RS09800 (Nhal_2016)	pilU	2085385..2086557 (-)	1173	WP_013032989.1	PilT/PilU family type 4a pilus ATPase	Machinery gene
NHAL_RS09805 (Nhal_2017)	-	2086683..2087597 (+)	915	WP_013032990.1	AEC family transporter	-
NHAL_RS09810 (Nhal_2018)	-	2087610..2088356 (-)	747	WP_013032991.1	competence/damage-inducible protein A	-
NHAL_RS09815 (Nhal_2019)	-	2088649..2090571 (+)	1923	WP_013032992.1	ATP-dependent DNA helicase	-
NHAL_RS09820 (Nhal_2020)	-	2090484..2091497 (-)	1014	WP_013032993.1	bile acid:sodium symporter family protein	-

Sequence

Protein

• Length: 390 a.a.
• Molecular weight: 43132.20 Da
• Isoelectric Point: 6.5678

>NTDB_id=36761 NHAL_RS09800 WP_013032989.1 2085385..2086557(-) (pilU) [Nitrosococcus halophilus Nc 4]
MEFKDYLKILVAHDGSDVYLSAGAPPCAKFHGLLKPLEKKALTSNDIKEIAYSIMNEEQTAEFEQKPEMNLAISESGIGR
FRVNIFKQRSAVSMVIRNIKTTIPNVDNLGLPPILKEVVISKHGLILFVGATGSGKSTSLAALIDHRNNNSAGHIITIED
PIEYIHHHKKSIVNQREVGVDTECYEDALKNTLRQAPDVILIGEIRDRNTMEHAIAFAETGHLCLSTLHANNANQALDRI
INFFPEDRRSQLLLDLSLNLRAFVSQRLVPTIDGKRTAAIEILLGTPLVRDLIHRGDIHAIKEVMEKSENLGMQTFDSAL
YKLYATSRISVEEALRNADSPNNLRLKINLSQKGPGTTAQPASAENTSSEQKTEKKAPGGLSFSLVEEED

Nucleotide

• Length: 1173 bp

>NTDB_id=36761 NHAL_RS09800 WP_013032989.1 2085385..2086557(-) (pilU) [Nitrosococcus halophilus Nc 4]
ATGGAATTCAAGGACTACCTGAAAATATTAGTGGCCCACGATGGCTCAGATGTTTATCTCAGCGCCGGAGCCCCCCCTTG
TGCCAAGTTTCACGGTTTACTGAAACCCCTTGAAAAAAAAGCGTTAACTTCTAACGACATCAAGGAAATAGCCTACAGCA
TTATGAATGAAGAGCAAACGGCCGAGTTTGAGCAAAAACCGGAGATGAATTTAGCCATTTCCGAATCTGGCATCGGACGC
TTTCGGGTCAATATTTTCAAGCAACGCAGTGCGGTTTCGATGGTCATCCGAAATATCAAGACCACCATCCCCAATGTGGA
TAACCTCGGCCTGCCCCCCATATTAAAAGAAGTCGTCATCTCCAAGCATGGCCTTATTCTGTTTGTAGGGGCAACGGGCT
CCGGTAAATCCACTTCCCTTGCCGCCCTCATCGACCACCGCAATAATAACAGCGCGGGGCACATCATCACGATTGAAGAC
CCTATCGAGTATATCCATCATCATAAAAAATCTATCGTCAATCAACGGGAAGTCGGCGTTGACACGGAGTGCTATGAAGA
TGCGCTTAAAAATACCCTTCGCCAAGCTCCCGATGTGATTCTAATTGGAGAGATCCGTGACCGGAACACGATGGAACATG
CGATTGCCTTTGCGGAAACAGGCCACCTGTGCCTCTCAACCCTGCATGCTAACAATGCCAACCAAGCCCTTGACCGGATC
ATTAACTTTTTCCCCGAAGACCGGCGTTCGCAACTTCTATTGGACCTCTCCTTGAACCTACGGGCTTTTGTTTCTCAACG
TCTCGTTCCCACCATCGATGGCAAGCGTACCGCCGCTATTGAAATTCTACTAGGTACGCCCCTCGTTCGTGACCTCATCC
ACCGCGGTGATATCCATGCCATTAAAGAGGTAATGGAAAAGTCAGAAAATCTCGGCATGCAAACCTTTGACAGTGCCCTC
TATAAATTATACGCGACAAGCCGTATCAGTGTTGAAGAAGCACTGCGTAATGCCGATTCCCCTAACAACCTCCGCCTCAA
AATCAACTTATCCCAGAAAGGGCCTGGGACTACCGCCCAACCCGCCTCCGCGGAAAACACCTCCTCAGAACAAAAAACGG
AGAAGAAAGCACCAGGGGGGCTCTCTTTTAGCCTGGTGGAAGAAGAAGATTAA

Domains

Predicted by InterproScan.

• Type II/IV secretion system protein (T2SSE) (63-269)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilU	Pseudomonas stutzeri DSM 10701	58.543	91.538	0.536
pilU	Acinetobacter baylyi ADP1	55.899	91.282	0.51
pilU	Vibrio cholerae strain A1552	51.289	89.487	0.459
pilT	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	41.207	97.692	0.403