Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   FGI21_RS18050 Genome accession   NZ_CP040817
Coordinates   4027542..4028090 (-) Length   182 a.a.
NCBI ID   WP_220177323.1    Uniprot ID   -
Organism   Dickeya zeae strain PL65     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4022542..4033090
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGI21_RS18015 (FGI21_18160) - 4022722..4023531 (-) 810 WP_168361579.1 hypothetical protein -
  FGI21_RS18020 (FGI21_18165) - 4023528..4024109 (-) 582 WP_168361580.1 DUF4255 domain-containing protein -
  FGI21_RS18025 (FGI21_18170) - 4024410..4024991 (+) 582 WP_220177318.1 hypothetical protein -
  FGI21_RS18030 (FGI21_18175) - 4025186..4025815 (+) 630 WP_220177319.1 NAD-dependent dehydratase -
  FGI21_RS18035 (FGI21_18180) - 4025851..4026426 (+) 576 WP_220177320.1 flavin reductase family protein -
  FGI21_RS18040 (FGI21_18185) - 4026487..4027134 (-) 648 WP_220177321.1 hypothetical protein -
  FGI21_RS18045 (FGI21_18190) - 4027238..4027435 (-) 198 WP_258570068.1 hypothetical protein -
  FGI21_RS18050 (FGI21_18195) ssb 4027542..4028090 (-) 549 WP_220177323.1 single-stranded DNA-binding protein Machinery gene
  FGI21_RS18055 (FGI21_18200) uvrA 4028332..4031163 (+) 2832 WP_168361587.1 excinuclease ABC subunit UvrA -
  FGI21_RS18060 (FGI21_18205) - 4031255..4031674 (+) 420 WP_220177324.1 secondary thiamine-phosphate synthase enzyme YjbQ -

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 19498.47 Da        Isoelectric Point: 5.2440

>NTDB_id=367474 FGI21_RS18050 WP_220177323.1 4027542..4028090(-) (ssb) [Dickeya zeae strain PL65]
MASRGVNKVILIGNLGQDPEVRYMPNGGAVANLTLATSDSWRDKQTGEQKERTEWHRVALYGKLAEIAGEYLRKGSQVYI
EGQLRTRKWQDQGGQDRYTTEVVVDISGSMQMLGGRTGGGAPAGGNMGGNTGGGNAPQSGWGQPQQPQQANQFSGGGQSR
AQQSAPMPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=367474 FGI21_RS18050 WP_220177323.1 4027542..4028090(-) (ssb) [Dickeya zeae strain PL65]
ATGGCCAGCAGAGGCGTTAATAAAGTGATTCTTATCGGGAATCTGGGTCAGGACCCGGAAGTCCGTTACATGCCGAATGG
CGGCGCAGTCGCTAACCTGACTCTGGCCACGTCGGACAGCTGGCGCGACAAGCAGACCGGCGAGCAGAAAGAGCGTACTG
AGTGGCACCGCGTCGCACTGTACGGCAAGCTGGCGGAAATCGCCGGTGAGTACCTGCGCAAAGGCTCTCAGGTGTATATT
GAAGGTCAGTTGCGTACCCGTAAATGGCAGGATCAAGGCGGCCAGGATCGCTACACCACTGAAGTGGTGGTCGATATCTC
CGGCAGCATGCAAATGCTGGGCGGCCGTACCGGCGGCGGCGCACCTGCTGGTGGCAACATGGGTGGCAATACGGGTGGTG
GTAACGCGCCACAAAGTGGTTGGGGTCAACCGCAACAGCCGCAGCAAGCCAACCAGTTCAGCGGTGGCGGCCAGTCCCGT
GCGCAGCAAAGCGCCCCGATGCCGAGCAACGAACCGCCGATGGATTTTGACGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

72.581

100

0.742
  ssb Glaesserella parasuis strain SC1401

55.376

100

0.566
  ssb Neisseria meningitidis MC58

44.974

100

0.467
  ssb Neisseria gonorrhoeae MS11

45.652

100

0.462

Multiple sequence alignment