Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   FGI00_RS04090 Genome accession   NZ_CP040815
Coordinates   912548..913096 (-) Length   182 a.a.
NCBI ID   WP_168366419.1    Uniprot ID   -
Organism   Dickeya zeae strain A5272     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 907548..918096
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGI00_RS04055 (FGI00_04060) - 908097..908678 (-) 582 WP_248589059.1 DUF4255 domain-containing protein -
  FGI00_RS04060 (FGI00_04065) - 908913..909377 (+) 465 WP_248589744.1 hypothetical protein -
  FGI00_RS04065 (FGI00_04070) - 909422..910009 (-) 588 WP_248589060.1 hypothetical protein -
  FGI00_RS04070 (FGI00_04075) - 910185..910814 (+) 630 WP_248589061.1 NAD-dependent dehydratase -
  FGI00_RS04075 (FGI00_04080) - 910857..911432 (+) 576 WP_248589062.1 flavin reductase family protein -
  FGI00_RS04080 (FGI00_04085) - 911493..912182 (-) 690 WP_248589063.1 hypothetical protein -
  FGI00_RS04085 (FGI00_04090) - 912245..912442 (-) 198 WP_248589064.1 hypothetical protein -
  FGI00_RS04090 (FGI00_04095) ssb 912548..913096 (-) 549 WP_168366419.1 single-stranded DNA-binding protein SSB1 Machinery gene
  FGI00_RS04095 (FGI00_04100) uvrA 913332..916163 (+) 2832 WP_248589065.1 excinuclease ABC subunit UvrA -
  FGI00_RS04100 (FGI00_04105) - 916586..917005 (+) 420 WP_248589066.1 secondary thiamine-phosphate synthase enzyme YjbQ -

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 19524.57 Da        Isoelectric Point: 5.2440

>NTDB_id=367446 FGI00_RS04090 WP_168366419.1 912548..913096(-) (ssb) [Dickeya zeae strain A5272]
MASRGVNKVILIGNLGQDPEVRYMPNGGAVANLTLATSDSWRDKQTGEQKERTEWHRVALYGKLAEIAGEYLRKGSQVYI
EGQLRTRKWQDQSGQDRYTTEVVVDISGSMQMLGGRTGGGAPAGGNMGGNMGGGNAPQGGWGQPQQPQQANQFSGGGQSR
PQQSAPMPGNEPPMDFDDDIPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=367446 FGI00_RS04090 WP_168366419.1 912548..913096(-) (ssb) [Dickeya zeae strain A5272]
ATGGCCAGCAGAGGCGTTAACAAAGTGATTCTTATCGGGAATCTGGGTCAGGACCCGGAAGTCCGTTACATGCCGAATGG
CGGCGCAGTCGCTAACCTGACTCTGGCCACGTCGGACAGCTGGCGCGACAAGCAGACCGGCGAGCAGAAAGAGCGTACAG
AGTGGCACCGCGTCGCCCTCTACGGCAAGCTGGCGGAAATCGCCGGTGAGTACCTGCGCAAAGGCTCTCAGGTGTATATC
GAAGGTCAGTTGCGTACCCGCAAATGGCAGGATCAGAGCGGCCAGGATCGCTACACCACTGAAGTGGTGGTCGATATCTC
CGGCAGCATGCAAATGCTGGGCGGCCGTACCGGCGGCGGCGCACCTGCTGGTGGCAACATGGGCGGCAATATGGGTGGTG
GTAACGCGCCACAAGGTGGTTGGGGTCAACCGCAACAGCCGCAGCAAGCCAACCAGTTCAGCGGTGGCGGTCAATCCCGT
CCGCAGCAAAGCGCCCCGATGCCGGGCAACGAACCGCCGATGGATTTTGACGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.194

100

0.758
  ssb Glaesserella parasuis strain SC1401

55.319

100

0.571
  ssb Neisseria meningitidis MC58

45.503

100

0.473
  ssb Neisseria gonorrhoeae MS11

45.946

100

0.467

Multiple sequence alignment