Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   SLIT_RS04005 Genome accession   NC_013959
Coordinates   790476..790937 (+) Length   153 a.a.
NCBI ID   WP_013028937.1    Uniprot ID   -
Organism   Sideroxydans lithotrophicus ES-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 785476..795937
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SLIT_RS03995 (Slit_0798) uvrA 785964..788783 (-) 2820 WP_013028935.1 excinuclease ABC subunit UvrA -
  SLIT_RS04000 (Slit_0799) - 789098..790474 (+) 1377 WP_013028936.1 MFS transporter -
  SLIT_RS04005 (Slit_0800) ssb 790476..790937 (+) 462 WP_013028937.1 single-stranded DNA-binding protein Machinery gene
  SLIT_RS04010 (Slit_0801) - 791004..792359 (-) 1356 WP_013028938.1 sigma-54-dependent Fis family transcriptional regulator -
  SLIT_RS04015 (Slit_0802) - 792653..792907 (+) 255 WP_013028939.1 YfhL family 4Fe-4S dicluster ferredoxin -
  SLIT_RS04020 (Slit_0803) - 792942..793322 (+) 381 WP_013028940.1 NifB/NifX family molybdenum-iron cluster-binding protein -
  SLIT_RS04025 (Slit_0804) - 793522..793845 (+) 324 WP_013028941.1 iron-sulfur cluster assembly accessory protein -
  SLIT_RS04030 (Slit_0805) nifU 793858..794748 (+) 891 WP_013028942.1 Fe-S cluster assembly protein NifU -

Sequence

Protein


Download         Length: 153 a.a.        Molecular weight: 17022.06 Da        Isoelectric Point: 7.0197

>NTDB_id=36735 SLIT_RS04005 WP_013028937.1 790476..790937(+) (ssb) [Sideroxydans lithotrophicus ES-1]
MSVNKVILVGRLGKDPETRYMTNGEAVTNVTLATSENWKDKSGEKQEKTEWHNLVFYRRLAEVAGEYLKKGSQIYVEGKI
QTRKWQDKETGKDRYTTEIIVNEMQMLGSKSGGGSFEVVENQSSAPARSAPAAKPAAAPAKGNFDNFDDDIPF

Nucleotide


Download         Length: 462 bp        

>NTDB_id=36735 SLIT_RS04005 WP_013028937.1 790476..790937(+) (ssb) [Sideroxydans lithotrophicus ES-1]
ATGTCGGTGAACAAAGTGATCCTGGTGGGGCGCCTGGGCAAAGACCCGGAGACCCGTTATATGACCAACGGTGAGGCGGT
GACCAATGTCACGCTGGCGACCTCCGAGAACTGGAAGGACAAGAGCGGCGAGAAGCAGGAAAAGACCGAGTGGCACAACC
TCGTGTTCTATCGCCGCTTGGCCGAAGTCGCGGGCGAGTACCTGAAGAAAGGTTCGCAGATCTACGTCGAGGGCAAGATC
CAGACGCGCAAATGGCAGGACAAGGAGACCGGCAAGGACCGCTACACCACCGAGATCATCGTCAACGAGATGCAGATGCT
GGGCAGCAAGTCCGGCGGGGGCAGCTTCGAAGTGGTGGAGAATCAATCGTCGGCCCCGGCACGCAGCGCACCCGCGGCCA
AGCCGGCCGCAGCGCCTGCGAAAGGCAACTTCGATAATTTCGACGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

52.486

100

0.621
  ssb Vibrio cholerae strain A1552

50.867

100

0.575
  ssb Neisseria meningitidis MC58

49.714

100

0.569
  ssb Neisseria gonorrhoeae MS11

49.143

100

0.562

Multiple sequence alignment