Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   FHI56_RS02780 Genome accession   NZ_CP040804
Coordinates   320790..322760 (+) Length   656 a.a.
NCBI ID   WP_149561141.1    Uniprot ID   A0A5C1JKA0
Organism   Streptococcus salivarius strain LAB813     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 315790..327760
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FHI56_RS02750 (FHI56_02750) radA 315993..317354 (+) 1362 WP_080562498.1 DNA repair protein RadA Machinery gene
  FHI56_RS02755 (FHI56_02755) - 317431..318126 (+) 696 WP_149561140.1 TIGR00266 family protein -
  FHI56_RS02760 (FHI56_02760) - 318277..318774 (+) 498 WP_002886981.1 carbonic anhydrase -
  FHI56_RS02765 (FHI56_02765) - 318869..319222 (-) 354 WP_002885872.1 DUF3397 domain-containing protein -
  FHI56_RS02770 (FHI56_02770) rplK 319394..319819 (+) 426 WP_002885648.1 50S ribosomal protein L11 -
  FHI56_RS02775 (FHI56_02775) rplA 319919..320608 (+) 690 WP_002885800.1 50S ribosomal protein L1 -
  FHI56_RS02780 (FHI56_02780) amiA 320790..322760 (+) 1971 WP_149561141.1 peptide ABC transporter substrate-binding protein Regulator
  FHI56_RS02785 (FHI56_02785) gltX 322996..324450 (+) 1455 WP_022496041.1 glutamate--tRNA ligase -
  FHI56_RS02790 (FHI56_02790) - 324900..326207 (+) 1308 WP_002885760.1 GHKL domain-containing protein -
  FHI56_RS02795 (FHI56_02795) - 326267..327157 (+) 891 WP_149561142.1 histidine kinase -

Sequence

Protein


Download         Length: 656 a.a.        Molecular weight: 73051.79 Da        Isoelectric Point: 4.8628

>NTDB_id=367337 FHI56_RS02780 WP_149561141.1 320790..322760(+) (amiA) [Streptococcus salivarius strain LAB813]
MKKSKVFLLAAVGLLSVGVLTACSSSSKTSGKTYNYVYGGDPATLDYVSTNKKNMTTAVSNGVDGLFENDQYGNLKPSVA
ENWSVSQDGLTYTYKIRKGVKWYTSDGEEYANVTAKDFVTGLKHAADTNSEAIYLLQNSVKGLNDYLSGANKDFSNVGIK
AVDDYTLQYTLSQPEPYWNSKLTYSVTWPVNEDFLKSKGKDFGKSTDPTSILYNGPYLLKSLTTKSSIEFTKNENYWDKD
NVYFDTVKLTYDDGTDQESLERNFTDGVYNLARLYPTSSNYSKVEKQYKDNIFYTQPGAAVEGVGVNIDRQTYDHTSKEN
DQQKTSTKTALLNKDFRQALGFAIDRTNYAAQLNGKEGGSTAVRNIYVKPDFVQADGKDFGTMVMDQLPAYGDEWSGVNL
ADSQDGLYNPEKAKAEFAKAKEALQAEGVQFPIHLDVPVNQSNKIFVNQVQSLKQSIESALGKDNVVLDLHQLSTDDFYN
ITYSASNAAAEDWDLSVGVAWEPDYLDPSTYLDVLKTTNSENTKSFMGYDDPNSQAVEKVGLKEYDQLVDDASKETTDLT
ARYEKYAKAQAWLTDSALYIPTTTYNGAAAVVSRIKPFSGAYAQAGDKGSTYYFKYLKSQDDIVTKKQYDSAYKDWLKER
AKSNDKAQKDLAKHVK

Nucleotide


Download         Length: 1971 bp        

>NTDB_id=367337 FHI56_RS02780 WP_149561141.1 320790..322760(+) (amiA) [Streptococcus salivarius strain LAB813]
ATGAAAAAGAGTAAGGTATTTTTACTGGCAGCCGTAGGCCTGTTATCTGTAGGTGTTTTAACGGCTTGCTCATCATCAAG
TAAGACATCTGGTAAGACTTATAATTATGTTTACGGTGGCGATCCTGCAACCCTAGACTATGTTTCTACAAATAAGAAAA
ACATGACGACAGCCGTTAGTAACGGTGTTGATGGTCTGTTTGAAAATGACCAATATGGGAATCTAAAACCTTCTGTCGCT
GAAAACTGGTCTGTTTCTCAAGATGGTTTGACATATACTTACAAGATTCGTAAGGGTGTCAAATGGTACACTTCAGACGG
CGAAGAGTATGCCAATGTAACAGCTAAAGACTTTGTAACAGGTCTTAAGCATGCTGCTGATACTAATTCTGAAGCGATTT
ATTTGCTACAAAACTCTGTTAAGGGCTTGAATGATTACCTGTCAGGTGCCAACAAGGACTTCTCAAATGTAGGTATCAAA
GCAGTTGATGATTACACTTTGCAATATACGCTTAGTCAACCAGAACCTTACTGGAATTCAAAATTGACCTACTCAGTTAC
TTGGCCTGTTAATGAAGATTTCTTGAAATCTAAAGGTAAAGACTTTGGTAAGTCAACAGACCCAACATCTATTCTTTATA
ACGGTCCATATCTTCTTAAATCTTTGACAACGAAGTCATCTATTGAGTTCACCAAGAATGAAAACTATTGGGATAAGGAT
AATGTCTATTTTGATACAGTCAAATTGACTTACGATGATGGTACAGACCAAGAATCCTTGGAACGTAACTTCACAGATGG
AGTTTATAACTTAGCTCGTCTATACCCAACTAGCTCAAACTATTCTAAAGTTGAAAAACAGTACAAAGACAATATTTTCT
ATACACAACCTGGAGCAGCTGTAGAAGGTGTCGGTGTTAATATCGATCGTCAAACTTATGACCATACATCTAAAGAAAAT
GATCAACAAAAGACATCAACTAAGACAGCTCTTCTTAACAAAGATTTCCGTCAAGCATTAGGTTTTGCTATTGACCGTAC
GAATTATGCTGCACAACTTAACGGTAAAGAGGGTGGTAGTACTGCCGTTCGTAATATCTATGTTAAACCAGACTTTGTTC
AAGCAGATGGTAAGGACTTCGGAACAATGGTAATGGATCAACTTCCAGCTTATGGTGATGAGTGGTCTGGTGTGAATCTT
GCAGATAGTCAAGATGGTCTTTATAATCCAGAAAAAGCTAAGGCTGAATTTGCTAAAGCCAAAGAAGCTCTTCAAGCAGA
AGGGGTTCAGTTCCCAATCCATTTGGATGTTCCTGTCAATCAGTCAAATAAAATCTTTGTGAACCAAGTGCAGTCACTTA
AACAATCTATTGAATCAGCTCTTGGAAAAGATAATGTTGTACTTGATCTTCACCAATTGTCAACTGATGATTTCTATAAC
ATTACCTACTCTGCTTCAAATGCAGCGGCAGAGGATTGGGATTTGTCAGTAGGTGTGGCTTGGGAGCCTGATTACCTTGA
TCCATCAACTTATCTTGATGTTTTGAAGACTACAAATAGTGAAAATACTAAATCTTTCATGGGTTATGACGATCCAAATA
GTCAAGCGGTTGAAAAAGTAGGTCTTAAAGAATATGACCAATTGGTTGATGATGCTTCTAAGGAAACAACAGACTTGACG
GCTCGTTATGAAAAATATGCAAAAGCTCAGGCATGGTTGACGGATAGTGCACTTTATATCCCAACGACTACTTATAACGG
TGCAGCCGCTGTAGTTTCTCGTATTAAGCCATTCTCAGGAGCTTATGCTCAAGCTGGTGATAAAGGTTCTACATACTACT
TCAAGTATCTTAAATCTCAAGATGATATTGTGACTAAGAAACAATACGATTCAGCTTATAAAGATTGGCTTAAAGAAAGA
GCGAAATCTAATGACAAAGCTCAAAAAGATCTTGCCAAACACGTTAAGTAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(75-519)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5C1JKA0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

69.97

100

0.7
  amiA3 Streptococcus thermophilus LMD-9

68.189

100

0.683
  amiA3 Streptococcus thermophilus LMG 18311

67.428

100

0.675

Multiple sequence alignment