Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   FHI56_RS02750 Genome accession   NZ_CP040804
Coordinates   315993..317354 (+) Length   453 a.a.
NCBI ID   WP_080562498.1    Uniprot ID   -
Organism   Streptococcus salivarius strain LAB813     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 310993..322354
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FHI56_RS02720 (FHI56_02720) - 311515..312078 (-) 564 WP_070579188.1 MptD family putative ECF transporter S component -
  FHI56_RS02725 (FHI56_02725) - 312087..312878 (-) 792 WP_002886988.1 formate/nitrite transporter family protein -
  FHI56_RS02730 (FHI56_02730) - 312995..314245 (-) 1251 WP_002886987.1 NAD(P)H-dependent oxidoreductase -
  FHI56_RS02735 (FHI56_02735) - 314264..314866 (-) 603 WP_002886986.1 NADPH-dependent FMN reductase -
  FHI56_RS02740 (FHI56_02740) - 315073..315519 (+) 447 WP_002886985.1 dUTP diphosphatase -
  FHI56_RS02745 (FHI56_02745) - 315529..315996 (+) 468 WP_002886984.1 isochorismatase family protein -
  FHI56_RS02750 (FHI56_02750) radA 315993..317354 (+) 1362 WP_080562498.1 DNA repair protein RadA Machinery gene
  FHI56_RS02755 (FHI56_02755) - 317431..318126 (+) 696 WP_149561140.1 TIGR00266 family protein -
  FHI56_RS02760 (FHI56_02760) - 318277..318774 (+) 498 WP_002886981.1 carbonic anhydrase -
  FHI56_RS02765 (FHI56_02765) - 318869..319222 (-) 354 WP_002885872.1 DUF3397 domain-containing protein -
  FHI56_RS02770 (FHI56_02770) rplK 319394..319819 (+) 426 WP_002885648.1 50S ribosomal protein L11 -
  FHI56_RS02775 (FHI56_02775) rplA 319919..320608 (+) 690 WP_002885800.1 50S ribosomal protein L1 -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49477.89 Da        Isoelectric Point: 6.9531

>NTDB_id=367336 FHI56_RS02750 WP_080562498.1 315993..317354(+) (radA) [Streptococcus salivarius strain LAB813]
MAKKKSTFVCRECGYNSPKYLGRCPNCSSWSSFEEEVEVQEVKNARVSLTGEKSKPTKLKEVSSINYARIKTDMDEFNRV
LGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLANKGTVLYVSGEESAEQIKLRSERLGDIDNEFYLYAETNMQAVRSQVE
AIKPDFLIIDSIQTIMSPEISGVQGSVSQVREVTAELMQIAKTNNIATFIVGHVTKEGQLAGPRMLEHMVDTVLYFEGER
HHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDGATGSAIVVTMEGSRPILAEVQALVTPTVFGNAK
RTTTGLDFNRVSLIMAVLEKRCGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKELPTNPQEAFIGEIGLTGEIR
RVTRIEQRINEAAKLGFTKIYAPKNSLHGMKIPEGIRVVGVTTVGEVLKKVFS

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=367336 FHI56_RS02750 WP_080562498.1 315993..317354(+) (radA) [Streptococcus salivarius strain LAB813]
ATAGCTAAGAAAAAATCAACTTTTGTTTGTCGAGAATGTGGCTACAATTCACCCAAATATCTAGGGCGTTGTCCCAACTG
TTCTTCCTGGTCCTCTTTTGAGGAGGAAGTTGAGGTGCAGGAGGTGAAAAATGCTCGTGTCAGTTTGACGGGTGAAAAGT
CCAAACCTACTAAATTAAAAGAAGTCTCTTCAATTAATTATGCCCGCATAAAGACTGACATGGACGAGTTTAACCGTGTT
TTAGGTGGCGGTGTGGTTCCGGGTAGTCTGGTTCTTATTGGAGGAGATCCAGGGATAGGGAAATCGACTCTTCTCTTACA
AGTGTCAACACAGCTGGCTAACAAGGGAACTGTCCTCTATGTTTCTGGGGAAGAATCTGCCGAGCAAATCAAATTGCGGA
GCGAACGTTTAGGTGATATTGATAACGAATTTTATCTTTATGCTGAGACTAATATGCAAGCCGTTCGCAGCCAAGTGGAG
GCTATAAAACCCGATTTCCTCATTATCGACTCTATTCAGACCATCATGAGTCCAGAGATTTCAGGCGTTCAAGGCTCTGT
ATCTCAGGTTCGTGAAGTTACTGCTGAACTCATGCAGATTGCCAAAACCAATAACATTGCTACATTTATTGTTGGGCATG
TGACCAAGGAGGGACAGTTGGCTGGACCACGTATGTTGGAACACATGGTGGATACTGTGCTCTATTTTGAGGGTGAACGT
CATCACACCTTCCGTATTTTACGAGCAGTCAAAAACCGTTTTGGTTCAACTAATGAGATTGGGATTTTTGAGATGCAGTC
TGGTGGTTTGGTAGAAGTGCTAAATCCTAGCCAGGTTTTCTTAGAGGAACGCCTAGACGGAGCCACAGGTTCTGCCATTG
TTGTAACAATGGAAGGTAGCAGACCTATCTTAGCTGAAGTTCAAGCCTTGGTGACCCCAACCGTCTTTGGTAATGCCAAG
CGGACAACAACAGGACTGGATTTTAACCGCGTCAGCCTTATCATGGCTGTTTTAGAGAAACGTTGTGGCCTTCTTCTCCA
AAATCAAGATGCTTATTTAAAATCAGCAGGTGGTGTCAAATTGGACGAGCCGGCTATTGACCTTGCTGTCGCTGTTGCGA
TTGCTTCTAGTTACAAGGAGCTTCCAACCAATCCACAAGAAGCTTTTATAGGAGAAATTGGCTTGACTGGAGAGATTCGC
CGAGTGACTCGCATTGAACAGCGTATTAATGAAGCTGCTAAACTAGGTTTTACTAAGATTTATGCTCCCAAAAATTCTCT
ACATGGTATGAAAATTCCAGAAGGTATCCGGGTGGTTGGCGTTACGACAGTGGGAGAAGTACTCAAAAAAGTCTTTTCTT
AA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(63-218)

Subunit ChlI of Mg-chelatase (ChlI)

(360-425)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

88.521

100

0.885
  radA Streptococcus pneumoniae D39

88.521

100

0.885
  radA Streptococcus pneumoniae R6

88.521

100

0.885
  radA Streptococcus pneumoniae TIGR4

88.521

100

0.885
  radA Streptococcus mitis NCTC 12261

88.521

100

0.885
  radA Streptococcus mitis SK321

88.521

100

0.885
  radA Bacillus subtilis subsp. subtilis str. 168

61.369

100

0.614

Multiple sequence alignment