Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | FG899_RS08640 | Genome accession | NZ_CP040799 |
| Coordinates | 1870336..1870782 (+) | Length | 148 a.a. |
| NCBI ID | WP_004088866.1 | Uniprot ID | Q87B55 |
| Organism | Xylella fastidiosa subsp. fastidiosa strain Bakersfield-1 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
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Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1862983..1884133 | 1870336..1870782 | within | 0 |
Gene organization within MGE regions
Location: 1862983..1884133
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FG899_RS08595 (FG899_08970) | - | 1862983..1863498 (-) | 516 | WP_004088839.1 | phage portal protein | - |
| FG899_RS11915 (FG899_08975) | - | 1863495..1863731 (-) | 237 | WP_004088842.1 | hypothetical protein | - |
| FG899_RS08605 (FG899_08980) | - | 1863808..1865907 (-) | 2100 | WP_004088845.1 | phage terminase large subunit family protein | - |
| FG899_RS08610 (FG899_08985) | - | 1865904..1866644 (-) | 741 | WP_228446148.1 | hypothetical protein | - |
| FG899_RS08615 (FG899_08990) | - | 1866909..1868378 (-) | 1470 | WP_004088851.1 | VapE domain-containing protein | - |
| FG899_RS08620 (FG899_08995) | - | 1868375..1869430 (-) | 1056 | WP_004088854.1 | DNA primase | - |
| FG899_RS08625 (FG899_09000) | - | 1869429..1869830 (+) | 402 | WP_004088857.1 | hypothetical protein | - |
| FG899_RS08630 (FG899_12290) | - | 1869932..1870105 (-) | 174 | WP_155115078.1 | hypothetical protein | - |
| FG899_RS08635 (FG899_09005) | - | 1870080..1870352 (+) | 273 | WP_004088863.1 | DUF5131 family protein | - |
| FG899_RS08640 (FG899_09010) | ssb | 1870336..1870782 (+) | 447 | WP_004088866.1 | single-stranded DNA-binding protein | Machinery gene |
| FG899_RS08645 (FG899_09015) | - | 1870801..1871076 (+) | 276 | WP_011098179.1 | hypothetical protein | - |
| FG899_RS08650 (FG899_09020) | - | 1871076..1872249 (+) | 1174 | Protein_1687 | integrase | - |
| FG899_RS08655 (FG899_09025) | - | 1872559..1872762 (+) | 204 | WP_004089756.1 | DUF4102 domain-containing protein | - |
| FG899_RS08660 (FG899_12295) | - | 1872829..1873236 (+) | 408 | WP_012382712.1 | hypothetical protein | - |
| FG899_RS11920 | - | 1873151..1873771 (+) | 621 | WP_161595265.1 | hypothetical protein | - |
| FG899_RS08665 (FG899_09035) | - | 1873716..1875170 (-) | 1455 | WP_004089759.1 | class I SAM-dependent methyltransferase | - |
| FG899_RS08670 (FG899_09040) | - | 1875167..1875856 (-) | 690 | WP_228446149.1 | restriction endonuclease | - |
| FG899_RS08675 (FG899_09045) | - | 1875931..1876140 (+) | 210 | WP_126709098.1 | hypothetical protein | - |
| FG899_RS08685 (FG899_09055) | - | 1876374..1876829 (-) | 456 | WP_012382713.1 | type IV pilin protein | - |
| FG899_RS08690 (FG899_09060) | - | 1876826..1881391 (-) | 4566 | WP_004089764.1 | pilus assembly protein | - |
| FG899_RS08695 (FG899_09065) | - | 1881395..1881889 (-) | 495 | WP_012382714.1 | PilX N-terminal domain-containing pilus assembly protein | - |
| FG899_RS08700 (FG899_09070) | - | 1881889..1883145 (-) | 1257 | WP_004089768.1 | PilW family protein | - |
| FG899_RS08705 (FG899_09075) | pilV | 1883142..1883624 (-) | 483 | WP_004083567.1 | type IV pilus modification protein PilV | - |
| FG899_RS08710 (FG899_09080) | - | 1883621..1884133 (-) | 513 | WP_004089770.1 | Tfp pilus assembly protein FimT/FimU | - |
Sequence
Protein
Download Length: 148 a.a. Molecular weight: 16607.50 Da Isoelectric Point: 7.3545
>NTDB_id=367269 FG899_RS08640 WP_004088866.1 1870336..1870782(+) (ssb) [Xylella fastidiosa subsp. fastidiosa strain Bakersfield-1]
MARGINKVILVGNLGNEPDIKYTQSGMTITSISLATSSKRKDREGNTQERTEWHRVKFFGKLGEIAAEYLHKGSQCYIEG
TIRYDKFTGNDGQDRYVTEIIADQMHMLGGRGEGSSGITPQRRPAKVRNNDKAYAYAGDDFHDDDIPF
MARGINKVILVGNLGNEPDIKYTQSGMTITSISLATSSKRKDREGNTQERTEWHRVKFFGKLGEIAAEYLHKGSQCYIEG
TIRYDKFTGNDGQDRYVTEIIADQMHMLGGRGEGSSGITPQRRPAKVRNNDKAYAYAGDDFHDDDIPF
Nucleotide
Download Length: 447 bp
>NTDB_id=367269 FG899_RS08640 WP_004088866.1 1870336..1870782(+) (ssb) [Xylella fastidiosa subsp. fastidiosa strain Bakersfield-1]
ATGGCACGCGGAATTAACAAGGTGATCCTAGTCGGAAACCTGGGAAACGAGCCAGATATTAAATACACCCAAAGCGGCAT
GACGATCACCAGTATTAGCCTAGCGACCAGCAGCAAACGCAAGGACAGAGAGGGCAATACCCAGGAGCGGACCGAATGGC
ACCGCGTCAAGTTTTTCGGAAAGCTGGGCGAGATTGCCGCTGAATATCTGCACAAGGGATCGCAGTGCTACATAGAGGGC
ACCATCCGTTACGACAAATTCACCGGCAATGATGGGCAGGACCGTTATGTCACTGAGATTATTGCTGACCAAATGCACAT
GCTCGGCGGTCGCGGCGAAGGCTCCAGCGGCATCACGCCACAGCGACGACCGGCAAAGGTCCGTAACAACGATAAAGCCT
ATGCGTATGCAGGCGACGACTTCCACGATGACGACATCCCGTTCTAG
ATGGCACGCGGAATTAACAAGGTGATCCTAGTCGGAAACCTGGGAAACGAGCCAGATATTAAATACACCCAAAGCGGCAT
GACGATCACCAGTATTAGCCTAGCGACCAGCAGCAAACGCAAGGACAGAGAGGGCAATACCCAGGAGCGGACCGAATGGC
ACCGCGTCAAGTTTTTCGGAAAGCTGGGCGAGATTGCCGCTGAATATCTGCACAAGGGATCGCAGTGCTACATAGAGGGC
ACCATCCGTTACGACAAATTCACCGGCAATGATGGGCAGGACCGTTATGTCACTGAGATTATTGCTGACCAAATGCACAT
GCTCGGCGGTCGCGGCGAAGGCTCCAGCGGCATCACGCCACAGCGACGACCGGCAAAGGTCCGTAACAACGATAAAGCCT
ATGCGTATGCAGGCGACGACTTCCACGATGACGACATCCCGTTCTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
40.909 |
100 |
0.486 |
| ssb | Neisseria meningitidis MC58 |
38.15 |
100 |
0.446 |
| ssb | Neisseria gonorrhoeae MS11 |
38.15 |
100 |
0.446 |
| ssb | Glaesserella parasuis strain SC1401 |
42.029 |
93.243 |
0.392 |