Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   FGL66_RS09555 Genome accession   NZ_CP040781
Coordinates   1968424..1968933 (-) Length   169 a.a.
NCBI ID   WP_180809582.1    Uniprot ID   A0A7H9DNH2
Organism   Staphylococcus sp. 17KM0847     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1963424..1973933
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGL66_RS09525 (FGL66_09460) - 1963588..1963965 (+) 378 WP_180809577.1 iron chaperone -
  FGL66_RS09530 (FGL66_09465) - 1964181..1965206 (+) 1026 WP_180809578.1 methionine ABC transporter ATP-binding protein -
  FGL66_RS09535 (FGL66_09470) - 1965200..1965859 (+) 660 WP_180809579.1 methionine ABC transporter permease -
  FGL66_RS09540 (FGL66_09475) gmpC 1965879..1966721 (+) 843 WP_180809580.1 dipeptide ABC transporter glycylmethionine-binding lipoprotein -
  FGL66_RS09545 (FGL66_09480) - 1966840..1968015 (-) 1176 WP_180809581.1 M20 family metallopeptidase -
  FGL66_RS09550 (FGL66_09485) rpsR 1968138..1968380 (-) 243 WP_014614919.1 30S ribosomal protein S18 -
  FGL66_RS09555 (FGL66_09490) ssbA 1968424..1968933 (-) 510 WP_180809582.1 single-stranded DNA-binding protein Machinery gene
  FGL66_RS09560 (FGL66_09495) rpsF 1968964..1969260 (-) 297 WP_180809583.1 30S ribosomal protein S6 -
  FGL66_RS09565 (FGL66_09500) ychF 1969487..1970584 (-) 1098 WP_180809584.1 redox-regulated ATPase YchF -
  FGL66_RS09570 (FGL66_09505) - 1970584..1970796 (-) 213 WP_180809585.1 DUF951 domain-containing protein -
  FGL66_RS09575 (FGL66_09510) - 1970817..1971704 (-) 888 WP_180809586.1 mechanosensitive ion channel family protein -
  FGL66_RS09580 (FGL66_09515) - 1971742..1972566 (-) 825 WP_180809587.1 ParB/RepB/Spo0J family partition protein -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18885.55 Da        Isoelectric Point: 4.9163

>NTDB_id=367105 FGL66_RS09555 WP_180809582.1 1968424..1968933(-) (ssbA) [Staphylococcus sp. 17KM0847]
MINRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRKQAENVSNFLFKGSLAGVDGRLQSR
SYENQEGRRIFVTEVVCDSVQFLEPKSANQRHAQNNYNQGNEFQSYGQNFGGQQQGQNSSYQNNQSSQNDNPFANANGPI
DISDDDLPF

Nucleotide


Download         Length: 510 bp        

>NTDB_id=367105 FGL66_RS09555 WP_180809582.1 1968424..1968933(-) (ssbA) [Staphylococcus sp. 17KM0847]
ATGATTAATAGAGTTGTATTAGTAGGTCGATTAACTAAAGATCCCGAATACAGAACGACACCCTCAGGCGTAAGTGTAGC
GACTTTTACTCTCGCAGTGAATCGTACGTTTACGAATGCGCAAGGGGAACGCGAAGCAGATTTCATTAACTGTGTTGTTT
TCCGTAAGCAAGCAGAGAACGTGAGTAATTTCTTGTTCAAAGGTAGTCTTGCTGGTGTTGATGGTCGCTTACAGTCACGC
AGCTACGAAAACCAAGAAGGTCGACGTATATTCGTTACAGAAGTCGTTTGTGACAGTGTCCAATTCCTTGAACCTAAATC
AGCGAATCAACGACACGCACAAAATAACTATAACCAAGGCAATGAATTCCAAAGTTATGGTCAGAACTTCGGTGGACAAC
AACAAGGTCAAAATTCGTCATATCAAAACAATCAGTCATCGCAAAATGACAACCCATTTGCGAATGCGAATGGACCAATT
GATATTAGTGATGATGACTTACCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7H9DNH2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

64.205

100

0.669
  ssb Latilactobacillus sakei subsp. sakei 23K

56.571

100

0.586
  ssb Glaesserella parasuis strain SC1401

36.216

100

0.396
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.434

62.722

0.373

Multiple sequence alignment