Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   FGD67_RS09980 Genome accession   NZ_CP040755
Coordinates   2191375..2192058 (-) Length   227 a.a.
NCBI ID   WP_306556796.1    Uniprot ID   -
Organism   Colwellia sp. M166     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 2173418..2193543 2191375..2192058 within 0


Gene organization within MGE regions


Location: 2173418..2193543
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGD67_RS09905 (FGD67_09805) - 2173418..2175592 (-) 2175 WP_257174844.1 ATP-dependent RecD-like DNA helicase -
  FGD67_RS09910 (FGD67_09810) - 2175589..2176029 (-) 441 WP_257174845.1 hypothetical protein -
  FGD67_RS09915 (FGD67_09815) - 2176189..2176506 (-) 318 WP_257174846.1 hypothetical protein -
  FGD67_RS09920 (FGD67_09820) - 2176859..2178037 (+) 1179 WP_257174847.1 HEPN/Toprim-associated domain-containing protein -
  FGD67_RS09925 (FGD67_09825) - 2178161..2179669 (-) 1509 WP_257173546.1 ISNCY family transposase -
  FGD67_RS09930 (FGD67_09830) - 2180099..2180662 (+) 564 WP_257174848.1 hypothetical protein -
  FGD67_RS09935 (FGD67_09835) - 2180944..2181381 (+) 438 WP_182760706.1 hypothetical protein -
  FGD67_RS09940 (FGD67_09840) - 2181441..2182090 (-) 650 Protein_1939 transposase -
  FGD67_RS09945 (FGD67_09845) - 2182185..2182574 (-) 390 WP_257174849.1 hypothetical protein -
  FGD67_RS09950 (FGD67_09850) istB 2182742..2183506 (-) 765 WP_257172029.1 IS21-like element ISShfr5 family helper ATPase IstB -
  FGD67_RS09955 (FGD67_09855) istA 2183535..2185079 (-) 1545 WP_257173761.1 IS21 family transposase -
  FGD67_RS09960 (FGD67_09860) - 2185549..2186046 (-) 498 WP_257174850.1 hypothetical protein -
  FGD67_RS09965 (FGD67_09865) - 2186049..2188292 (-) 2244 WP_257174851.1 hypothetical protein -
  FGD67_RS09970 (FGD67_09870) - 2188285..2189892 (-) 1608 WP_257174852.1 site-specific integrase -
  FGD67_RS09975 (FGD67_09875) - 2189882..2191225 (-) 1344 WP_257174853.1 site-specific integrase -
  FGD67_RS09980 (FGD67_09880) ssb 2191375..2192058 (-) 684 WP_306556796.1 single-stranded DNA-binding protein Machinery gene
  FGD67_RS09985 (FGD67_09885) - 2192238..2192636 (-) 399 WP_257174855.1 thioesterase family protein -
  FGD67_RS09990 (FGD67_09890) - 2192848..2193543 (+) 696 WP_257174856.1 2OG-Fe(II) oxygenase -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 24347.66 Da        Isoelectric Point: 5.9149

>NTDB_id=367023 FGD67_RS09980 WP_306556796.1 2191375..2192058(-) (ssb) [Colwellia sp. M166]
MAGVNKVIILGNLGKDPEVRFMPNGGGVANLTIATSESWKDKQTGEQKEKTEWHRVVMFGKLAEIAGEYLKKGSKVYIEG
ALQTRKWQNQQGQDQYTTEIVVQGFNGTMQMLDSRGGSGAGAGGFNQQTSQQGGGFQQQSAPQQSGGFQQQAAPQQAYNK
PAQQSGGFQQQAAPQQGGGFQQQSAPQQSGGYQQQSAAQQGGGFQQQSAPKVNPQEPTIDFDDDIPF

Nucleotide


Download         Length: 684 bp        

>NTDB_id=367023 FGD67_RS09980 WP_306556796.1 2191375..2192058(-) (ssb) [Colwellia sp. M166]
ATGGCTGGTGTCAATAAAGTAATAATTTTAGGTAACTTAGGAAAAGATCCTGAAGTACGTTTTATGCCTAACGGTGGTGG
TGTTGCTAACCTCACTATTGCAACTTCTGAAAGTTGGAAAGACAAGCAAACGGGTGAACAAAAAGAAAAAACAGAATGGC
ACCGTGTGGTTATGTTCGGCAAGTTGGCTGAAATTGCAGGCGAATACCTGAAAAAAGGCTCAAAAGTTTACATTGAAGGT
GCTTTACAAACACGCAAATGGCAGAACCAACAAGGCCAAGATCAATACACCACTGAAATCGTTGTACAAGGTTTTAACGG
CACAATGCAAATGTTAGATTCTCGTGGTGGTAGCGGCGCGGGTGCTGGTGGTTTCAATCAACAAACATCTCAGCAAGGTG
GTGGCTTTCAGCAGCAGTCAGCCCCACAGCAATCAGGTGGTTTTCAGCAACAAGCGGCACCTCAACAAGCTTACAATAAG
CCTGCACAACAAAGTGGCGGCTTTCAACAACAAGCAGCACCACAGCAAGGCGGTGGTTTTCAACAACAATCAGCACCACA
ACAAAGTGGCGGTTATCAGCAGCAATCTGCAGCACAGCAAGGTGGCGGTTTTCAACAGCAGTCAGCACCTAAGGTAAATC
CACAAGAGCCAACGATAGACTTTGATGACGATATTCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

54.222

99.119

0.537
  ssb Glaesserella parasuis strain SC1401

47.598

100

0.48
  ssb Neisseria gonorrhoeae MS11

40.179

98.678

0.396
  ssb Neisseria meningitidis MC58

39.732

98.678

0.392

Multiple sequence alignment