Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   GSS20_RS15570 Genome accession   NZ_CP047995
Coordinates   3322164..3323687 (-) Length   507 a.a.
NCBI ID   WP_140391724.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain 20150710009     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3317164..3328687
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GSS20_RS15550 (GSS20_16365) - 3318445..3319431 (+) 987 WP_140391728.1 serine/threonine protein kinase -
  GSS20_RS15555 (GSS20_16370) - 3319466..3320068 (+) 603 WP_005454748.1 thiol:disulfide interchange protein DsbA/DsbL -
  GSS20_RS15560 (GSS20_16375) - 3320110..3320988 (-) 879 WP_020904428.1 acyltransferase -
  GSS20_RS15565 (GSS20_16380) - 3321151..3322107 (+) 957 WP_140121309.1 DUF2860 domain-containing protein -
  GSS20_RS15570 (GSS20_16385) comM 3322164..3323687 (-) 1524 WP_140391724.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  GSS20_RS15575 (GSS20_16390) ilvG 3324152..3325798 (+) 1647 WP_005461385.1 acetolactate synthase 2 catalytic subunit -
  GSS20_RS15580 (GSS20_16395) ilvM 3325809..3326093 (+) 285 WP_005378958.1 acetolactate synthase 2 small subunit -
  GSS20_RS15585 (GSS20_16400) ilvE 3326106..3327044 (+) 939 WP_015297538.1 branched-chain-amino-acid transaminase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 55002.07 Da        Isoelectric Point: 8.4861

>NTDB_id=366971 GSS20_RS15570 WP_140391724.1 3322164..3323687(-) (comM) [Vibrio parahaemolyticus strain 20150710009]
MGLAIIHSRASVGVQAPSVSVEVHISNGMPGFTLVGLPETTVKESKDRVRSAIINSNFQFPAKRITVNLAPADLPKEGGR
FDLPIALGILAASEQIATDRLKNYEFVGELALSGGLRPVKGVLPAALAASKVGRHLVVPHVNGDQAALVGKEQHKSAQSL
LEVCAELCGQHRLNIYQTPKRKTVEKHGRDLQDIIGQQQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLCDLLPEMSD
EEAMETASVASLTQSEINEHNWKSRPFRAPHHSSSMAALVGGGSVPRPGEISLAHNGLLFLDEMPEFDRKVLDSLREPLE
SGEIIISRAQGKTRFPARFQLVGALNPSPTGYYEGNQARTNPQAILRYLGRLSGPLLDRFDMSLEIPSLPKGTLAEGGDR
GEPTELVKERVSLARESMLNRNGKVNALLGSREIEAFCPLQKSDAEFLETALHRLGLSIRAYHRIIKVARTIADLEGAEQ
IERPHLAEALGYRAMDRLLKQLTAQAV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=366971 GSS20_RS15570 WP_140391724.1 3322164..3323687(-) (comM) [Vibrio parahaemolyticus strain 20150710009]
ATGGGGCTGGCAATCATTCATAGTCGGGCAAGTGTCGGGGTGCAAGCACCGTCAGTTAGTGTGGAAGTGCATATCAGTAA
TGGCATGCCCGGCTTTACTCTCGTTGGGTTGCCGGAGACTACGGTAAAGGAATCCAAAGATCGTGTACGCAGTGCGATCA
TCAATTCAAATTTCCAGTTTCCAGCCAAGCGCATTACGGTCAATTTGGCCCCGGCGGATTTACCTAAAGAAGGCGGACGT
TTTGATTTGCCTATCGCATTGGGTATTTTGGCGGCTTCAGAGCAAATCGCGACAGATAGGCTCAAAAACTACGAATTTGT
TGGCGAATTAGCCCTGTCTGGAGGATTAAGACCTGTTAAAGGTGTGCTTCCTGCCGCGTTGGCTGCAAGCAAAGTAGGAC
GTCATTTGGTGGTGCCTCATGTCAATGGCGATCAAGCAGCGTTGGTGGGCAAAGAGCAACATAAGTCAGCGCAATCCTTA
CTTGAGGTGTGTGCGGAGTTATGTGGTCAGCATCGTCTCAATATTTATCAAACTCCGAAGCGAAAAACGGTTGAAAAGCA
TGGTCGAGATCTACAAGACATCATTGGGCAGCAACAAGGCAAGCGTGCTCTAGAAATTGCGGCGGCTGGAAACCACAACC
TACTTTTTCTTGGTCCTCCTGGTACAGGAAAAACCATGCTGGCATCGCGTTTATGCGACTTACTGCCGGAGATGAGCGAC
GAAGAAGCGATGGAAACGGCTTCAGTCGCATCACTGACGCAAAGTGAGATTAATGAGCACAACTGGAAGTCGCGTCCGTT
TCGTGCGCCGCACCATTCCAGTTCGATGGCTGCATTAGTTGGTGGTGGCTCGGTGCCAAGACCGGGTGAGATTTCTTTGG
CTCACAATGGGTTATTGTTCCTTGATGAAATGCCGGAGTTTGACCGTAAAGTGTTGGACTCGTTACGAGAACCACTGGAA
TCGGGTGAGATCATCATTTCGCGCGCACAAGGAAAAACGCGTTTTCCTGCTCGTTTTCAGCTGGTGGGGGCGCTGAATCC
AAGCCCAACTGGCTATTACGAAGGGAATCAAGCTCGCACTAACCCTCAAGCTATTTTGCGTTACTTAGGTCGTTTATCGG
GACCGCTTCTCGACCGTTTTGATATGTCGTTAGAAATTCCATCCTTACCGAAAGGCACGTTGGCGGAAGGTGGTGACCGA
GGTGAACCCACAGAACTCGTCAAAGAGCGCGTCAGTCTTGCTCGCGAGAGCATGCTCAATCGAAACGGCAAAGTCAACGC
ACTGCTTGGCAGCCGTGAGATTGAGGCATTTTGTCCGTTGCAAAAAAGCGATGCGGAGTTTCTCGAAACTGCACTCCATC
GGCTGGGGTTATCGATTCGTGCCTATCATCGCATCATTAAAGTGGCCCGTACGATAGCGGATTTAGAAGGTGCTGAGCAG
ATTGAGCGGCCTCATTTGGCGGAAGCGCTCGGGTATCGCGCGATGGACCGATTGCTGAAACAACTCACGGCTCAAGCCGT
GTAG

Domains

Predicted by InterProScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

94.083

100

0.941
  comM Vibrio cholerae O1 biovar El Tor strain E7946

84.813

100

0.848
  comM Vibrio cholerae strain A1552

84.813

100

0.848
  comM Haemophilus influenzae Rd KW20

66.272

100

0.663
  comM Glaesserella parasuis strain SC1401

64.706

100

0.651
  comM Acinetobacter baylyi ADP1

49.499

98.422

0.487
  comM Legionella pneumophila str. Paris

49.798

97.83

0.487
  comM Legionella pneumophila strain ERS1305867

49.798

97.83

0.487
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.094

100

0.442

Multiple sequence alignment