Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   FED49_RS16630 Genome accession   NZ_CP040747
Coordinates   3177536..3178225 (-) Length   229 a.a.
NCBI ID   WP_008348273.1    Uniprot ID   A0A5K1NCW2
Organism   Bacillus altitudinis strain HQ-51-Ba     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3172536..3183225
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FED49_RS16595 - 3172622..3173104 (-) 483 WP_007499977.1 flagellar protein FlgN -
  FED49_RS16600 flgM 3173123..3173386 (-) 264 WP_003213252.1 flagellar biosynthesis anti-sigma factor FlgM -
  FED49_RS16605 - 3173466..3173885 (-) 420 WP_017357864.1 TIGR03826 family flagellar region protein -
  FED49_RS16610 comFC 3173942..3174628 (-) 687 WP_171971360.1 ComF family protein Machinery gene
  FED49_RS16615 - 3174625..3174918 (-) 294 WP_017357862.1 late competence development ComFB family protein -
  FED49_RS16620 comFA 3174983..3176362 (-) 1380 WP_138826871.1 DEAD/DEAH box helicase Machinery gene
  FED49_RS16625 - 3176482..3177324 (-) 843 WP_138826536.1 DegV family protein -
  FED49_RS16630 degU 3177536..3178225 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  FED49_RS16635 degS 3178290..3179465 (-) 1176 WP_008360205.1 sensor histidine kinase Regulator
  FED49_RS16640 - 3179687..3180355 (+) 669 WP_017357860.1 YigZ family protein -
  FED49_RS16645 - 3180340..3181437 (+) 1098 WP_007499958.1 LCP family protein -
  FED49_RS16650 - 3181475..3182542 (-) 1068 WP_007499956.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25852.54 Da        Isoelectric Point: 5.9436

>NTDB_id=366970 FED49_RS16630 WP_008348273.1 3177536..3178225(-) (degU) [Bacillus altitudinis strain HQ-51-Ba]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVADGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=366970 FED49_RS16630 WP_008348273.1 3177536..3178225(-) (degU) [Bacillus altitudinis strain HQ-51-Ba]
GTGACTAAAGTAAATATTGTAATTATCGATGACCACCAATTATTCCGTGAAGGTGTCAAACGGATTTTAGATTTTGAACC
TACTTTTGAAGTAGTTGCAGAAGGAGACGACGGTGACGAAGCTGCACGTATCGTAGAACACTATCATCCGGATGTTGTCA
TTATGGACATTAATATGCCGAATGTAAATGGTGTGGAGGCTACAAAACAGCTAGTAGAGCTTTATCCCGAATCAAAAGTC
ATTATCCTATCTATTCATGACGATGAAAACTATGTGACACATGCATTGAAAACAGGAGCAAGAGGCTACTTGTTAAAAGA
AATGGATGCAGATACCCTCATTGAAGCAGTAAAAGTAGTAGCTGACGGAGGCTCTTATTTACATCCGAAAGTCACTCATA
ACTTAGTAAATGAATTCCGACGCTTAGCAACAAGCGGCGTTTCAGCACATCCACAGCACGAGGTATATCCTGAAATTCGC
AGACCACTTCATATCTTAACAAGACGTGAATGTGAAGTTCTTCAAATGTTAGCTGACGGAAAGAGCAACAGAGGTATTGG
TGAGTCGCTCTTTATTAGTGAGAAAACAGTCAAAAACCACGTGAGTAACATTTTGCAAAAAATGAATGTAAATGACCGTA
CTCAAGCTGTTGTTGTAGCAATTAAAAACGGCTGGGTAGAAATGAGATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5K1NCW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

99.563

100

0.996

Multiple sequence alignment