Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   FED49_RS16620 Genome accession   NZ_CP040747
Coordinates   3174983..3176362 (-) Length   459 a.a.
NCBI ID   WP_138826871.1    Uniprot ID   -
Organism   Bacillus altitudinis strain HQ-51-Ba     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3169983..3181362
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FED49_RS16585 flgL 3170166..3171077 (-) 912 WP_008348257.1 flagellar hook-associated protein FlgL -
  FED49_RS16590 flgK 3171086..3172606 (-) 1521 WP_138826534.1 flagellar hook-associated protein FlgK -
  FED49_RS16595 - 3172622..3173104 (-) 483 WP_007499977.1 flagellar protein FlgN -
  FED49_RS16600 flgM 3173123..3173386 (-) 264 WP_003213252.1 flagellar biosynthesis anti-sigma factor FlgM -
  FED49_RS16605 - 3173466..3173885 (-) 420 WP_017357864.1 TIGR03826 family flagellar region protein -
  FED49_RS16610 comFC 3173942..3174628 (-) 687 WP_171971360.1 ComF family protein Machinery gene
  FED49_RS16615 - 3174625..3174918 (-) 294 WP_017357862.1 late competence development ComFB family protein -
  FED49_RS16620 comFA 3174983..3176362 (-) 1380 WP_138826871.1 DEAD/DEAH box helicase Machinery gene
  FED49_RS16625 - 3176482..3177324 (-) 843 WP_138826536.1 DegV family protein -
  FED49_RS16630 degU 3177536..3178225 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  FED49_RS16635 degS 3178290..3179465 (-) 1176 WP_008360205.1 sensor histidine kinase Regulator
  FED49_RS16640 - 3179687..3180355 (+) 669 WP_017357860.1 YigZ family protein -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 52527.14 Da        Isoelectric Point: 9.9201

>NTDB_id=366969 FED49_RS16620 WP_138826871.1 3174983..3176362(-) (comFA) [Bacillus altitudinis strain HQ-51-Ba]
MNLEKAMELSHKLQSRHLLPVECQCTQSELEWLENQGFIHRTPAVDRVASGLICCRCGVSNMRYFALSPCETCKKDCVYC
RSCIMLGKVSECGFLYEWTGPQKKDTRQVELTWQGELSKGQKRASDRLVEAIQNKFDLLVWAVCGAGKTEVLFHGIKYAL
NNGMSVCIATPRTDVVLELEPRMRKAFQGLNIAALYGGSSQRFQMAPLMIATTHQLMRYKNAFDVLIVDEVDAFPYSIDE
RLQFAVLKSMKKTGVRIYLSATPSKKMQKDVARRQLEAIKIPLRFHQKPLPVPTFQWVGDWKKRLKRNRLPASTMNWLHE
HITKKKRVLLFVPSISTMKKVTHILQVQDVNVQGVSADDQERKQKVQHFRDHRYDVLVTTTILERGVTIQDVQVGVLGAE
SPIFTESALVQISGRAGRHPDFFNGDVYFFHFGLTRSMKQAKKHIVKMNNTAEKEFSEK

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=366969 FED49_RS16620 WP_138826871.1 3174983..3176362(-) (comFA) [Bacillus altitudinis strain HQ-51-Ba]
TTGAATCTGGAAAAAGCAATGGAACTCAGTCACAAGCTACAATCAAGGCACCTTCTTCCTGTTGAATGTCAATGTACACA
GTCCGAATTGGAGTGGCTGGAGAATCAAGGATTTATCCATAGAACACCTGCAGTCGATAGGGTGGCGAGTGGTTTGATCT
GCTGCCGGTGCGGTGTATCAAACATGCGCTACTTTGCCCTCTCTCCGTGTGAAACATGTAAAAAAGACTGTGTATACTGT
AGATCCTGCATCATGCTGGGAAAAGTAAGCGAATGTGGCTTTCTCTACGAATGGACGGGTCCACAAAAGAAAGACACAAG
ACAAGTTGAATTAACATGGCAGGGAGAGCTTTCTAAAGGGCAAAAGAGAGCGTCCGATAGGCTAGTAGAAGCAATCCAAA
ACAAATTTGATCTGCTCGTTTGGGCTGTTTGTGGTGCGGGGAAAACGGAGGTGCTTTTTCATGGAATAAAATATGCGCTA
AATAACGGAATGAGTGTTTGTATTGCGACGCCTAGAACCGATGTTGTACTTGAGCTTGAACCTCGAATGAGAAAGGCATT
TCAAGGACTGAATATAGCTGCACTTTATGGCGGGAGTTCTCAAAGATTTCAAATGGCGCCGCTTATGATCGCTACAACCC
ATCAGCTAATGAGATATAAAAACGCCTTTGATGTCCTCATTGTAGACGAAGTCGATGCTTTTCCTTATTCAATCGATGAA
CGGCTTCAGTTTGCTGTTTTAAAGTCAATGAAAAAAACAGGAGTTAGAATTTACTTAAGTGCCACACCATCTAAAAAAAT
GCAAAAAGATGTTGCTCGTAGACAATTAGAAGCGATCAAAATTCCTCTGCGCTTCCACCAAAAACCGTTACCTGTCCCAA
CATTTCAATGGGTTGGAGATTGGAAAAAGAGATTAAAAAGAAATCGGCTTCCAGCATCTACAATGAACTGGCTGCATGAA
CATATCACAAAGAAAAAAAGAGTGTTACTCTTTGTTCCTTCTATTTCTACTATGAAGAAGGTAACTCATATTCTTCAAGT
TCAAGATGTAAATGTACAGGGTGTTTCTGCGGATGATCAAGAAAGGAAGCAAAAAGTCCAGCATTTCAGAGATCATAGAT
ACGATGTATTGGTTACAACAACTATTCTAGAAAGAGGCGTTACCATTCAAGATGTTCAAGTGGGCGTATTAGGTGCGGAA
TCTCCTATTTTTACAGAAAGTGCACTTGTTCAAATTTCTGGTAGAGCAGGGAGACATCCAGATTTTTTTAACGGAGACGT
GTACTTTTTTCATTTTGGCTTAACGAGAAGTATGAAACAAGCAAAGAAACATATCGTAAAAATGAATAATACAGCTGAAA
AAGAGTTTTCTGAAAAATAG

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(320-419)

Type III restriction enzyme, res subunit (ResIII)

(116-264)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

51.902

97.386

0.505

Multiple sequence alignment