Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   FED49_RS11645 Genome accession   NZ_CP040747
Coordinates   2232797..2233090 (-) Length   97 a.a.
NCBI ID   WP_138826065.1    Uniprot ID   -
Organism   Bacillus altitudinis strain HQ-51-Ba     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2227797..2238090
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FED49_RS11595 sinR 2227961..2228296 (+) 336 WP_017357978.1 transcriptional regulator SinR Regulator
  FED49_RS11600 tasA 2228364..2229164 (-) 801 WP_008342195.1 biofilm matrix protein TasA -
  FED49_RS11605 sipW 2229223..2229795 (-) 573 WP_017357979.1 signal peptidase I SipW -
  FED49_RS11610 tapA 2229845..2230372 (-) 528 WP_138826063.1 amyloid fiber anchoring/assembly protein TapA -
  FED49_RS11615 - 2230625..2230951 (+) 327 WP_017367590.1 DUF3889 domain-containing protein -
  FED49_RS11620 - 2230986..2231180 (-) 195 WP_008342191.1 YqzE family protein -
  FED49_RS11625 - 2231241..2231624 (-) 384 WP_035702776.1 competence type IV pilus minor pilin ComGG -
  FED49_RS11630 comGF 2231621..2232118 (-) 498 WP_041091745.1 competence type IV pilus minor pilin ComGF -
  FED49_RS11635 comGE 2232060..2232374 (-) 315 WP_017357984.1 competence type IV pilus minor pilin ComGE -
  FED49_RS11640 comGD 2232358..2232804 (-) 447 WP_096881621.1 competence type IV pilus minor pilin ComGD -
  FED49_RS11645 comGC 2232797..2233090 (-) 294 WP_138826065.1 competence type IV pilus major pilin ComGC Machinery gene
  FED49_RS11650 comGB 2233107..2234147 (-) 1041 WP_138826067.1 competence type IV pilus assembly protein ComGB -
  FED49_RS11655 comGA 2234128..2235198 (-) 1071 WP_138826069.1 competence type IV pilus ATPase ComGA Machinery gene
  FED49_RS11660 - 2235656..2236528 (-) 873 WP_138826071.1 STAS domain-containing protein -
  FED49_RS11670 - 2236754..2237134 (-) 381 WP_007501232.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  FED49_RS11675 - 2237347..2237589 (+) 243 WP_003217440.1 DUF2626 domain-containing protein -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10772.65 Da        Isoelectric Point: 6.7161

>NTDB_id=366951 FED49_RS11645 WP_138826065.1 2232797..2233090(-) (comGC) [Bacillus altitudinis strain HQ-51-Ba]
MNDKGFTLLEMLIVMLVISILLLITIPNITRHHQSIQAKGCEGLKSMVSTQVMAYELEHDGKTPSLAELEKEGYVKKGLT
FPNGKAIFIQNGDVKNE

Nucleotide


Download         Length: 294 bp        

>NTDB_id=366951 FED49_RS11645 WP_138826065.1 2232797..2233090(-) (comGC) [Bacillus altitudinis strain HQ-51-Ba]
ATGAATGATAAAGGATTTACACTGTTAGAAATGTTAATTGTCATGCTTGTGATCTCCATTCTTTTATTGATCACCATTCC
AAATATCACTCGGCATCATCAAAGCATTCAAGCAAAGGGCTGTGAAGGGCTGAAATCAATGGTGAGTACACAGGTAATGG
CATATGAATTAGAGCATGACGGCAAGACGCCATCTTTAGCTGAATTAGAAAAAGAAGGCTATGTCAAAAAAGGATTAACT
TTTCCAAATGGAAAGGCAATTTTTATTCAAAACGGCGATGTGAAAAATGAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

65.979

100

0.66
  comGC Staphylococcus aureus MW2

40.217

94.845

0.381
  comGC Staphylococcus aureus N315

40.217

94.845

0.381

Multiple sequence alignment