Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   FED49_RS11655 Genome accession   NZ_CP040747
Coordinates   2234128..2235198 (-) Length   356 a.a.
NCBI ID   WP_138826069.1    Uniprot ID   -
Organism   Bacillus altitudinis strain HQ-51-Ba     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2229128..2240198
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FED49_RS11605 sipW 2229223..2229795 (-) 573 WP_017357979.1 signal peptidase I SipW -
  FED49_RS11610 tapA 2229845..2230372 (-) 528 WP_138826063.1 amyloid fiber anchoring/assembly protein TapA -
  FED49_RS11615 - 2230625..2230951 (+) 327 WP_017367590.1 DUF3889 domain-containing protein -
  FED49_RS11620 - 2230986..2231180 (-) 195 WP_008342191.1 YqzE family protein -
  FED49_RS11625 - 2231241..2231624 (-) 384 WP_035702776.1 competence type IV pilus minor pilin ComGG -
  FED49_RS11630 comGF 2231621..2232118 (-) 498 WP_041091745.1 competence type IV pilus minor pilin ComGF -
  FED49_RS11635 comGE 2232060..2232374 (-) 315 WP_017357984.1 competence type IV pilus minor pilin ComGE -
  FED49_RS11640 comGD 2232358..2232804 (-) 447 WP_096881621.1 competence type IV pilus minor pilin ComGD -
  FED49_RS11645 comGC 2232797..2233090 (-) 294 WP_138826065.1 competence type IV pilus major pilin ComGC Machinery gene
  FED49_RS11650 comGB 2233107..2234147 (-) 1041 WP_138826067.1 competence type IV pilus assembly protein ComGB -
  FED49_RS11655 comGA 2234128..2235198 (-) 1071 WP_138826069.1 competence type IV pilus ATPase ComGA Machinery gene
  FED49_RS11660 - 2235656..2236528 (-) 873 WP_138826071.1 STAS domain-containing protein -
  FED49_RS11670 - 2236754..2237134 (-) 381 WP_007501232.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  FED49_RS11675 - 2237347..2237589 (+) 243 WP_003217440.1 DUF2626 domain-containing protein -
  FED49_RS11680 - 2237638..2238276 (-) 639 WP_138826073.1 MBL fold metallo-hydrolase -
  FED49_RS11685 - 2238437..2238610 (+) 174 WP_003217333.1 DUF2759 domain-containing protein -
  FED49_RS11690 - 2238635..2238949 (-) 315 WP_008342314.1 MTH1187 family thiamine-binding protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 40328.67 Da        Isoelectric Point: 9.0418

>NTDB_id=366952 FED49_RS11655 WP_138826069.1 2234128..2235198(-) (comGA) [Bacillus altitudinis strain HQ-51-Ba]
MYGIEYLGQELLEEACRMRASDVHIVPKEKEASVSFRVDADLIQQRIIDKKSGERLIAHFKFLSSMDIGERRRPQNGSLA
VMLRRGQVFVRLSTLPTVNDESLVIRILPQDHVPKTKYLSLFPKASARLLSFLNHSHGLILFTGPTNSGKTTTLYSLIQF
AKKHFNRNIITLEDPVETRNEEVLQVQVNEKAGITYAAGLRAILRHDPDMIVLGEIRDAETARTAIRAALTGHLVMSTLH
AKNAKGALYRMLEFGVTMNELEQTMVAIAAQRLIELACPFCGETCELYCKLNRSVRRTNVFELLYGKELGECIKEAKGEY
AHSSYETLQRLIRKGVALGYLSKSTYHRWVYEEANL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=366952 FED49_RS11655 WP_138826069.1 2234128..2235198(-) (comGA) [Bacillus altitudinis strain HQ-51-Ba]
TTGTATGGTATTGAATATTTGGGGCAAGAGCTGCTAGAAGAGGCGTGTCGCATGAGAGCATCTGATGTGCATATTGTTCC
GAAAGAAAAGGAAGCTTCAGTCTCTTTTCGTGTAGACGCTGACCTCATTCAGCAGCGGATCATTGACAAAAAGAGCGGAG
AGCGGCTCATTGCTCATTTCAAATTTTTATCTTCTATGGATATTGGTGAAAGAAGGAGACCACAAAATGGGTCATTGGCT
GTGATGCTAAGACGCGGTCAAGTGTTTGTTCGGCTTTCTACATTACCGACTGTAAATGATGAAAGTTTAGTGATTCGGAT
TTTACCGCAGGATCATGTGCCGAAAACAAAGTATTTGTCACTGTTCCCGAAGGCTTCAGCGAGATTATTATCGTTTCTGA
ATCATTCGCATGGGCTCATTTTATTTACTGGACCAACAAATTCAGGGAAAACGACAACACTTTATTCATTGATCCAGTTT
GCCAAAAAACATTTTAATCGAAATATTATTACCCTTGAAGATCCTGTGGAAACAAGAAATGAAGAAGTGCTGCAGGTTCA
AGTAAATGAAAAAGCTGGTATCACGTATGCGGCAGGTTTACGCGCTATTTTAAGACATGATCCAGATATGATTGTGCTTG
GAGAAATAAGAGATGCGGAAACAGCCAGAACAGCTATTAGAGCAGCTTTGACAGGTCATTTAGTCATGAGCACACTGCAC
GCAAAGAATGCAAAAGGAGCTCTTTATCGAATGCTCGAATTTGGTGTGACGATGAATGAACTCGAACAAACAATGGTTGC
CATTGCTGCTCAGCGGTTAATCGAACTCGCATGTCCATTTTGCGGCGAAACGTGTGAGCTTTATTGCAAACTAAATCGGT
CAGTCAGACGAACAAATGTATTTGAATTGCTTTACGGAAAGGAGCTTGGTGAGTGTATCAAAGAGGCAAAAGGAGAATAC
GCTCATTCGTCATACGAAACACTGCAAAGATTAATTCGGAAAGGAGTGGCACTCGGCTATTTATCAAAAAGCACATATCA
TCGCTGGGTTTATGAAGAAGCGAACCTCTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(11-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

64.607

100

0.646

Multiple sequence alignment