Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   FED49_RS11595 Genome accession   NZ_CP040747
Coordinates   2227961..2228296 (+) Length   111 a.a.
NCBI ID   WP_017357978.1    Uniprot ID   -
Organism   Bacillus altitudinis strain HQ-51-Ba     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2222961..2233296
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FED49_RS11575 gcvT 2223437..2224534 (-) 1098 WP_138826059.1 glycine cleavage system aminomethyltransferase GcvT -
  FED49_RS11580 - 2225096..2226766 (+) 1671 WP_138826061.1 DEAD/DEAH box helicase -
  FED49_RS11585 - 2226781..2227578 (+) 798 WP_017367588.1 YqhG family protein -
  FED49_RS11590 - 2227763..2227927 (+) 165 WP_008342197.1 anti-repressor SinI family protein -
  FED49_RS11595 sinR 2227961..2228296 (+) 336 WP_017357978.1 transcriptional regulator SinR Regulator
  FED49_RS11600 tasA 2228364..2229164 (-) 801 WP_008342195.1 biofilm matrix protein TasA -
  FED49_RS11605 sipW 2229223..2229795 (-) 573 WP_017357979.1 signal peptidase I SipW -
  FED49_RS11610 tapA 2229845..2230372 (-) 528 WP_138826063.1 amyloid fiber anchoring/assembly protein TapA -
  FED49_RS11615 - 2230625..2230951 (+) 327 WP_017367590.1 DUF3889 domain-containing protein -
  FED49_RS11620 - 2230986..2231180 (-) 195 WP_008342191.1 YqzE family protein -
  FED49_RS11625 - 2231241..2231624 (-) 384 WP_035702776.1 competence type IV pilus minor pilin ComGG -
  FED49_RS11630 comGF 2231621..2232118 (-) 498 WP_041091745.1 competence type IV pilus minor pilin ComGF -
  FED49_RS11635 comGE 2232060..2232374 (-) 315 WP_017357984.1 competence type IV pilus minor pilin ComGE -
  FED49_RS11640 comGD 2232358..2232804 (-) 447 WP_096881621.1 competence type IV pilus minor pilin ComGD -
  FED49_RS11645 comGC 2232797..2233090 (-) 294 WP_138826065.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12936.47 Da        Isoelectric Point: 4.8062

>NTDB_id=366950 FED49_RS11595 WP_017357978.1 2227961..2228296(+) (sinR) [Bacillus altitudinis strain HQ-51-Ba]
MIGQRIKQYRNEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLNENDETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQIWKKKQEEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=366950 FED49_RS11595 WP_017357978.1 2227961..2228296(+) (sinR) [Bacillus altitudinis strain HQ-51-Ba]
TTGATTGGCCAGCGTATTAAACAATACCGCAATGAAAAAGGCTACTCACTATCAGAACTGGCCGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGTTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTTGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACACTGTTAAACGAAAATGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAA
CTAGTTCGAGATGCAATGACATCAGGGGTTTCGAAAAAGCAATTTCGTGAATTTTTAGATTATCAAATCTGGAAAAAAAA
GCAAGAAGAGGAGTAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

92.793

100

0.928

Multiple sequence alignment