Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   FGM04_RS16350 Genome accession   NZ_CP040717
Coordinates   3520936..3521523 (-) Length   195 a.a.
NCBI ID   WP_005340181.1    Uniprot ID   A0A165S798
Organism   Aeromonas veronii strain HX3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3515936..3526523
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGM04_RS16320 (FGM04_16345) - 3515951..3516184 (-) 234 WP_157161874.1 EamA family transporter -
  FGM04_RS16325 (FGM04_16350) - 3516421..3517401 (-) 981 WP_026141915.1 IS5-like element IS5 family transposase -
  FGM04_RS16330 (FGM04_16355) - 3517447..3518220 (-) 774 WP_157161875.1 hypothetical protein -
  FGM04_RS16335 (FGM04_16360) - 3518283..3519230 (-) 948 WP_012564931.1 IS30-like element ISAeca1 family transposase -
  FGM04_RS16340 - 3519321..3519488 (-) 168 WP_157161876.1 hypothetical protein -
  FGM04_RS16345 (FGM04_16365) - 3519485..3520783 (-) 1299 WP_111901627.1 site-specific integrase -
  FGM04_RS16350 (FGM04_16370) ssb 3520936..3521523 (-) 588 WP_005340181.1 single-stranded DNA-binding protein Machinery gene
  FGM04_RS16355 (FGM04_16375) - 3521951..3522598 (+) 648 WP_042080923.1 LuxR C-terminal-related transcriptional regulator -
  FGM04_RS16360 (FGM04_16380) - 3522598..3523041 (+) 444 WP_157161877.1 curli production assembly/transport protein CsgE -
  FGM04_RS16365 (FGM04_16385) - 3523053..3523454 (+) 402 WP_019445195.1 curli assembly protein CsgF -
  FGM04_RS16370 (FGM04_16390) - 3523462..3524301 (+) 840 WP_005355003.1 CsgG/HfaB family protein -
  FGM04_RS16375 (FGM04_16395) - 3524488..3525009 (+) 522 WP_157161878.1 curlin -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 21583.11 Da        Isoelectric Point: 5.9301

>NTDB_id=366777 FGM04_RS16350 WP_005340181.1 3520936..3521523(-) (ssb) [Aeromonas veronii strain HX3]
MASRGINKVILIGNLGQDPEVRYMPSGGAVTNITLATSETWRDKQTGEQKERTEWHRVVFMGKLAEVAGEYLKKGSQVYV
EGKLQTRKWQDQSGQERYTTEVLVDSFTGVMQMLGGRPQGGQGMGQNMGGQSQGNWGQPQQSMPAQQPMNQQRPAPAPQQ
NMQPQGGYGRPAQQPQSAPPVYNEPPMDFDDDIPF

Nucleotide


Download         Length: 588 bp        

>NTDB_id=366777 FGM04_RS16350 WP_005340181.1 3520936..3521523(-) (ssb) [Aeromonas veronii strain HX3]
ATGGCCAGTCGAGGCATCAATAAAGTCATTCTGATCGGTAACCTCGGGCAAGACCCGGAAGTACGCTACATGCCGAGTGG
CGGTGCTGTGACCAACATTACTCTGGCTACCTCCGAAACCTGGCGCGACAAGCAGACCGGTGAGCAGAAAGAGCGTACCG
AATGGCATCGCGTCGTCTTCATGGGCAAGTTGGCCGAAGTGGCTGGCGAGTACCTGAAGAAGGGCTCCCAGGTCTATGTG
GAAGGCAAACTGCAAACCCGCAAATGGCAAGATCAGAGCGGCCAGGAGCGCTACACCACTGAAGTGCTGGTCGACAGCTT
CACTGGCGTGATGCAGATGCTGGGTGGCCGTCCGCAAGGCGGTCAGGGCATGGGCCAGAACATGGGTGGCCAATCCCAGG
GTAACTGGGGTCAGCCGCAGCAGAGCATGCCTGCCCAGCAGCCGATGAATCAGCAGCGCCCGGCACCGGCTCCGCAGCAG
AACATGCAGCCGCAAGGCGGTTATGGCCGTCCTGCCCAGCAGCCGCAATCTGCGCCGCCGGTATATAACGAGCCGCCGAT
GGATTTCGACGACGATATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A165S798

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

69.347

100

0.708
  ssb Glaesserella parasuis strain SC1401

53.886

98.974

0.533
  ssb Neisseria meningitidis MC58

46.597

97.949

0.456
  ssb Neisseria gonorrhoeae MS11

46.842

97.436

0.456

Multiple sequence alignment