Detailed information NTG0366774

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: FGM04_RS15925
• Genome accession: NZ_CP040717
• Coordinates: 3427005..3427877 (-)
• Length: 290 a.a.
• NCBI ID: WP_157161846.1
• Uniprot ID: -
• Organism: Aeromonas veronii strain HX3
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3422005..3432877

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FGM04_RS15900 (FGM04_15920)	-	3423739..3424923 (+)	1185	WP_157161845.1	tetratricopeptide repeat protein	-
FGM04_RS15905 (FGM04_15925)	mutT	3424932..3425336 (+)	405	WP_042053534.1	8-oxo-dGTP diphosphatase MutT	-
FGM04_RS15910 (FGM04_15930)	yacG	3425413..3425607 (-)	195	WP_005336142.1	DNA gyrase inhibitor YacG	-
FGM04_RS15915 (FGM04_15935)	zapD	3425617..3426339 (-)	723	WP_005355104.1	cell division protein ZapD	-
FGM04_RS15920 (FGM04_15940)	coaE	3426377..3426991 (-)	615	WP_139478393.1	dephospho-CoA kinase	-
FGM04_RS15925 (FGM04_15945)	pilD	3427005..3427877 (-)	873	WP_157161846.1	A24 family peptidase	Machinery gene
FGM04_RS15930 (FGM04_15950)	pilC	3427939..3429180 (-)	1242	WP_005355091.1	type II secretion system F family protein	Machinery gene
FGM04_RS15935 (FGM04_15955)	pilB	3429420..3431126 (-)	1707	WP_005356616.1	PilB family type IVa pilus assembly ATPase TapB	Machinery gene
FGM04_RS22440 (FGM04_15960)	-	3431129..3431515 (-)	387	WP_100646864.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
FGM04_RS15945 (FGM04_15970)	nadC	3431831..3432694 (-)	864	WP_064339261.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32048.34 Da
• Isoelectric Point: 6.5960

>NTDB_id=366774 FGM04_RS15925 WP_157161846.1 3427005..3427877(-) (pilD) [Aeromonas veronii strain HX3]
MTLLLELAHSLPWLYFSLVFLFSLMIGSFLNVVIHRLPIMLEREWQAEYHSYFAPDEEAVAPERYNLMVPRSACPHCGHT
ITALENIPLLSWLLLKGRCRDCQAPISARYPLVELLTALLSVAVAMVITPGWGTLAALLLTWVLVALTFIDLDKMLLPDQ
LTLPLLWGGLLFNLAGGFAPLADAVIGAMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIILLLSSL
VGAVIGISLIALQKHHQGKPIPFGPYLAIAGWIALLWGDTITRWYLSTLL

Nucleotide

• Length: 873 bp

>NTDB_id=366774 FGM04_RS15925 WP_157161846.1 3427005..3427877(-) (pilD) [Aeromonas veronii strain HX3]
ATGACACTTCTTCTCGAGCTGGCTCACAGCTTGCCCTGGCTCTACTTCTCGCTGGTTTTTCTTTTCTCCCTGATGATCGG
CAGCTTCCTTAACGTAGTGATCCACCGCTTGCCCATCATGCTGGAGCGGGAGTGGCAGGCCGAGTATCACAGCTACTTCG
CCCCCGATGAGGAGGCCGTTGCGCCAGAGCGCTACAACCTGATGGTCCCCCGCTCCGCATGCCCTCACTGTGGCCACACC
ATCACTGCGCTTGAGAACATCCCGCTGTTGAGCTGGCTCTTGCTCAAAGGGCGTTGCCGCGACTGTCAGGCCCCCATCTC
GGCCCGCTATCCGCTGGTAGAGCTGCTGACCGCTCTGCTATCGGTGGCCGTTGCCATGGTCATAACACCGGGCTGGGGCA
CGCTGGCCGCCCTATTGCTGACCTGGGTGCTGGTCGCCCTCACCTTTATCGATCTCGACAAGATGTTGCTGCCCGACCAG
CTCACCCTGCCACTGCTGTGGGGCGGGCTGCTGTTCAATCTGGCAGGTGGCTTCGCCCCCTTGGCTGATGCAGTGATCGG
CGCCATGGCGGGCTATCTGGTGCTATGGAGCCTCTACTGGGCTTTCAAGCTGCTCACTGGCAAGGAGGGGATGGGCTATG
GCGACTTCAAGCTGCTGGCGGCGCTGGGCGCCTGGCTCGGTTGGCAGGCGCTGCCCATAATTCTGCTGCTCTCATCTCTG
GTCGGCGCCGTGATCGGCATCAGCCTGATCGCCTTGCAAAAACATCATCAGGGCAAGCCCATCCCCTTCGGCCCCTACCT
CGCCATCGCGGGCTGGATTGCGCTGCTATGGGGCGATACCATCACCCGCTGGTATCTCTCTACCCTGCTTTGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (139-247)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	60.627	98.966	0.6
pilD	Vibrio campbellii strain DS40M4	56.597	99.31	0.562
pilD	Acinetobacter baumannii D1279779	53.597	95.862	0.514
pilD	Acinetobacter nosocomialis M2	53.597	95.862	0.514
pilD	Neisseria gonorrhoeae MS11	49.638	95.172	0.472