Detailed information NTG0036675

Bioinformatically predicted

Overview

• Name: ysxA/radC
• Type: Machinery gene
• Locus tag: SAPIG_RS08945
• Genome accession: NC_017333
• Coordinates: 1798028..1798714 (-)
• Length: 228 a.a.
• NCBI ID: WP_000692886.1
• Uniprot ID: -
• Organism: Staphylococcus aureus subsp. aureus ST398
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1793028..1803714

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SAPIG_RS08900 (SAPIG1708)	rpmA	1793675..1793959 (-)	285	WP_000916187.1	50S ribosomal protein L27	-
SAPIG_RS08905 (SAPIG1709)	-	1793971..1794291 (-)	321	WP_000633692.1	ribosomal-processing cysteine protease Prp	-
SAPIG_RS08910 (SAPIG1710)	rplU	1794297..1794605 (-)	309	WP_000457386.1	50S ribosomal protein L21	-
SAPIG_RS08915 (SAPIG1711)	mreD	1794966..1795496 (-)	531	WP_001259929.1	rod shape-determining protein MreD	-
SAPIG_RS08920 (SAPIG1712)	mreC	1795496..1796338 (-)	843	WP_000911033.1	rod shape-determining protein MreC	-
SAPIG_RS08925	-	1796536..1796655 (-)	120	WP_000840603.1	hypothetical protein	-
SAPIG_RS08930 (SAPIG1713)	-	1796729..1797202 (-)	474	WP_001236734.1	DUF4930 family protein	-
SAPIG_RS08935	-	1797362..1797559 (+)	198	WP_000041095.1	hypothetical protein	-
SAPIG_RS08940 (SAPIG1714)	-	1797676..1797960 (-)	285	WP_000171859.1	hypothetical protein	-
SAPIG_RS08945 (SAPIG1715)	ysxA/radC	1798028..1798714 (-)	687	WP_000692886.1	RadC family protein	Machinery gene
SAPIG_RS08950 (SAPIG1716)	-	1798711..1799418 (-)	708	WP_000261102.1	prepilin peptidase	-
SAPIG_RS08960 (SAPIG1717)	-	1799680..1800951 (-)	1272	WP_001108344.1	bifunctional folylpolyglutamate synthase/dihydrofolate synthase	-
SAPIG_RS08965 (SAPIG1718)	-	1800964..1803594 (-)	2631	WP_000425349.1	valine--tRNA ligase	-

Sequence

Protein

• Length: 228 a.a.
• Molecular weight: 25311.24 Da
• Isoelectric Point: 6.7572

>NTDB_id=36675 SAPIG_RS08945 WP_000692886.1 1798028..1798714(-) (ysxA/radC) [Staphylococcus aureus subsp. aureus ST398]
MKIKEMVTSEMPRERLLSHGAKSLSNTELLAILINTGRKGFSSIDISNELLKSASNLNELKKSSINDLIQVKGIGLQKAI
TLKAAFELGERMGRRAENNRIKITQPSDVADYMIPTMKDLTQEHFVILLLNSKNVVIKETCVFKGTLNSSIVHPREIFSI
AVRENANAIIAVHNHPSGDVTPSQEDIITTMRLKECGLILGIDLLDHIIIGDNRFTSLVEAGYFDEND

Nucleotide

• Length: 687 bp

>NTDB_id=36675 SAPIG_RS08945 WP_000692886.1 1798028..1798714(-) (ysxA/radC) [Staphylococcus aureus subsp. aureus ST398]
TTGAAAATTAAAGAAATGGTAACTTCAGAAATGCCAAGAGAACGTTTGTTAAGCCATGGTGCAAAAAGTCTTTCGAATAC
AGAATTATTAGCTATATTAATTAACACCGGAAGAAAAGGATTCTCGAGTATTGACATTAGTAATGAACTGCTTAAATCTG
CATCGAATCTGAATGAATTGAAAAAATCTTCAATTAACGATTTGATACAAGTTAAAGGGATTGGATTACAAAAAGCAATT
ACATTAAAAGCGGCATTTGAGTTAGGGGAAAGGATGGGGAGAAGAGCTGAAAATAATCGTATAAAAATAACGCAACCAAG
TGATGTTGCTGATTATATGATTCCAACAATGAAAGATTTAACACAAGAACATTTTGTCATTTTATTGTTAAATTCAAAAA
ATGTAGTGATTAAAGAAACCTGTGTTTTTAAAGGTACATTAAATAGTTCGATTGTACATCCACGTGAAATTTTTAGTATT
GCGGTGAGAGAAAATGCCAATGCAATCATCGCAGTTCATAATCATCCATCCGGTGATGTAACGCCCTCACAAGAAGATAT
CATAACAACAATGAGGTTGAAGGAGTGTGGTTTGATTTTAGGGATAGATTTATTGGATCATATTATAATCGGTGATAATA
GATTTACGAGTCTTGTAGAAGCGGGTTACTTTGATGAAAATGATTGA

Domains

Predicted by InterProScan.

• RadC-like JAB domain (RadC) (103-222)

• UPF0758 N-terminal (UPF0758_N) (3-80)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ysxA/radC	Bacillus subtilis subsp. subtilis str. 168	52.679	98.246	0.518
radC	Streptococcus pneumoniae TIGR4	41.038	92.982	0.382
radC	Streptococcus gordonii str. Challis substr. CH1	39.908	95.614	0.382
radC	Streptococcus pneumoniae R6	40.566	92.982	0.377
radC	Streptococcus pneumoniae D39	40.566	92.982	0.377