Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   FGE23_RS02310 Genome accession   NZ_CP040672
Coordinates   466278..466967 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus amyloliquefaciens strain X030     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 461278..471967
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGE23_RS02275 - 461476..461958 (-) 483 WP_003151394.1 flagellar protein FlgN -
  FGE23_RS02280 flgM 461973..462239 (-) 267 WP_146275630.1 flagellar biosynthesis anti-sigma factor FlgM -
  FGE23_RS02285 - 462309..462728 (-) 420 WP_146275632.1 TIGR03826 family flagellar region protein -
  FGE23_RS02290 comFC 462802..463491 (-) 690 WP_202980098.1 phosphoribosyltransferase family protein Machinery gene
  FGE23_RS02295 - 463497..463781 (-) 285 WP_017418816.1 late competence development ComFB family protein -
  FGE23_RS02300 comFA 463839..465224 (-) 1386 WP_146275634.1 DEAD/DEAH box helicase Machinery gene
  FGE23_RS02305 - 465332..466180 (-) 849 WP_003151387.1 DegV family protein -
  FGE23_RS02310 degU 466278..466967 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  FGE23_RS02315 degS 467044..468207 (-) 1164 WP_015387626.1 two-component sensor histidine kinase DegS Regulator
  FGE23_RS02320 - 468430..469077 (+) 648 WP_060657503.1 YigZ family protein -
  FGE23_RS02325 - 469082..470257 (+) 1176 WP_146275636.1 LCP family protein -
  FGE23_RS02330 - 470347..471423 (-) 1077 WP_003151382.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=366334 FGE23_RS02310 WP_003219701.1 466278..466967(-) (degU) [Bacillus amyloliquefaciens strain X030]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=366334 FGE23_RS02310 WP_003219701.1 466278..466967(-) (degU) [Bacillus amyloliquefaciens strain X030]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTATCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGCGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTATCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAATCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTAGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment