Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   FGE23_RS02300 Genome accession   NZ_CP040672
Coordinates   463839..465224 (-) Length   461 a.a.
NCBI ID   WP_146275634.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain X030     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 458839..470224
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGE23_RS02265 flgL 459014..459931 (-) 918 WP_003151396.1 flagellar hook-associated protein FlgL -
  FGE23_RS02270 flgK 459943..461460 (-) 1518 WP_015387629.1 flagellar hook-associated protein FlgK -
  FGE23_RS02275 - 461476..461958 (-) 483 WP_003151394.1 flagellar protein FlgN -
  FGE23_RS02280 flgM 461973..462239 (-) 267 WP_146275630.1 flagellar biosynthesis anti-sigma factor FlgM -
  FGE23_RS02285 - 462309..462728 (-) 420 WP_146275632.1 TIGR03826 family flagellar region protein -
  FGE23_RS02290 comFC 462802..463491 (-) 690 WP_202980098.1 phosphoribosyltransferase family protein Machinery gene
  FGE23_RS02295 - 463497..463781 (-) 285 WP_017418816.1 late competence development ComFB family protein -
  FGE23_RS02300 comFA 463839..465224 (-) 1386 WP_146275634.1 DEAD/DEAH box helicase Machinery gene
  FGE23_RS02305 - 465332..466180 (-) 849 WP_003151387.1 DegV family protein -
  FGE23_RS02310 degU 466278..466967 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  FGE23_RS02315 degS 467044..468207 (-) 1164 WP_015387626.1 two-component sensor histidine kinase DegS Regulator
  FGE23_RS02320 - 468430..469077 (+) 648 WP_060657503.1 YigZ family protein -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 52535.97 Da        Isoelectric Point: 10.1928

>NTDB_id=366333 FGE23_RS02300 WP_146275634.1 463839..465224(-) (comFA) [Bacillus amyloliquefaciens strain X030]
MAEGASEFSEVRDFFYGRHLLRAEIPFSDQRINRFIEKEYITAEPSIIRRKNRYICQRCGQSDQACFAAFWAPSAKRQIT
YCRACVMMGRADELTSLYSWNQAPENSWKPVKLSWEGTLTDGQKQAAAALTDAIKERQELLVWAVCGSGKTEMLFPGIEF
ALNHGLRVCVATPRTDVVLELLPRLKKAFEKVDVSALYGGSEDKGRLTPLMISTAHQLMRYRDIFDVMIIDEVDAFPFSA
DETLRFAVDKARKKNSALVYVTATPSDTLKKNAEAGLLKSVRIPARYHRKPLPEPRFLWCGNWKKKLQKGKLPRSVTDWV
RQKLQSQLPVFLFVPSVHVLKKTTDYFQKLNVRAEGVHAEDTFRKDKVKRFRDGRLDLLVTTTILERGVTVPKVQTCVLG
AEAPIFTESALVQIAGRTGRHYKHFSGDVVMFHFGMTNGMKKAKKHIEHMNKLAQKSKLLD

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=366333 FGE23_RS02300 WP_146275634.1 463839..465224(-) (comFA) [Bacillus amyloliquefaciens strain X030]
ATGGCCGAAGGTGCTTCAGAATTTTCAGAGGTGCGGGATTTCTTTTACGGCCGACATTTATTGAGAGCTGAGATACCGTT
TTCAGATCAGCGCATCAACCGTTTTATAGAAAAAGAGTATATAACGGCCGAGCCGTCAATCATCCGCCGGAAAAACCGTT
ACATCTGCCAACGATGCGGTCAGTCTGATCAAGCCTGCTTTGCGGCATTTTGGGCGCCCTCTGCCAAAAGGCAGATCACC
TATTGCCGTGCCTGTGTCATGATGGGAAGGGCTGATGAACTGACATCGTTATATTCTTGGAATCAAGCCCCTGAAAACAG
CTGGAAGCCTGTAAAGCTTTCTTGGGAAGGAACACTGACAGACGGACAGAAGCAGGCCGCCGCCGCGCTTACAGATGCGA
TAAAAGAGAGACAAGAGCTGTTAGTATGGGCGGTTTGCGGATCGGGGAAAACAGAGATGCTGTTTCCGGGTATCGAGTTT
GCGCTGAATCACGGTTTGCGCGTCTGTGTCGCGACTCCGCGTACAGATGTCGTACTTGAACTGCTGCCGAGACTGAAAAA
AGCATTTGAGAAAGTCGACGTTTCTGCTTTGTACGGCGGCAGCGAGGACAAAGGCCGCTTGACTCCGTTGATGATTTCAA
CCGCTCACCAGCTGATGCGCTACCGAGACATTTTTGATGTCATGATAATAGATGAAGTAGATGCGTTTCCTTTTTCAGCC
GATGAGACATTAAGGTTCGCTGTTGATAAAGCGAGGAAGAAAAACAGCGCCCTTGTTTATGTAACGGCAACTCCTTCAGA
CACATTAAAAAAGAATGCTGAAGCCGGTTTGCTGAAAAGCGTTCGCATACCGGCCAGATATCATCGGAAACCTCTCCCGG
AGCCGCGTTTTTTGTGGTGCGGCAATTGGAAGAAGAAGCTTCAGAAGGGAAAACTGCCGCGCTCTGTAACGGATTGGGTC
CGCCAAAAACTTCAATCACAGCTGCCGGTTTTCTTATTCGTTCCGTCTGTACACGTATTGAAAAAGACAACGGATTATTT
TCAGAAATTAAACGTAAGGGCAGAGGGCGTGCATGCGGAAGACACATTCAGAAAGGATAAAGTGAAACGGTTCAGAGACG
GCCGGCTAGATCTGCTGGTAACAACTACGATTTTAGAAAGAGGAGTTACCGTACCCAAAGTTCAGACATGTGTCCTCGGC
GCAGAAGCACCTATCTTTACTGAGAGCGCGCTCGTACAGATCGCGGGCAGAACGGGAAGGCATTATAAACATTTCAGCGG
TGATGTCGTCATGTTTCATTTCGGAATGACAAACGGAATGAAAAAAGCAAAAAAACATATAGAACATATGAACAAATTGG
CACAAAAAAGTAAATTGTTGGACTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(118-266)

Helicase conserved C-terminal domain (Helicase_C)

(328-421)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

63.043

99.783

0.629
  comFA Latilactobacillus sakei subsp. sakei 23K

38.409

95.445

0.367

Multiple sequence alignment