Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   M594_RS08380 Genome accession   NZ_CP047883
Coordinates   1731396..1733762 (+) Length   788 a.a.
NCBI ID   WP_173876540.1    Uniprot ID   -
Organism   Streptococcus mitis strain S022-V3-A4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1726396..1738762
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M594_RS08360 (M594_08400) - 1728729..1729277 (-) 549 WP_173876535.1 CvpA family protein -
  M594_RS08365 (M594_08405) zapA 1729274..1729576 (-) 303 WP_000002019.1 cell division protein ZapA -
  M594_RS08370 (M594_08410) rnhC 1729663..1730544 (+) 882 WP_173876536.1 ribonuclease HIII -
  M594_RS08375 (M594_08415) lepB 1730548..1731162 (+) 615 WP_173876538.1 signal peptidase I -
  M594_RS08380 (M594_08420) recD/recD2/recDB 1731396..1733762 (+) 2367 WP_173876540.1 ATP-dependent RecD-like DNA helicase Machinery gene
  M594_RS08385 (M594_08425) tig 1733810..1735093 (-) 1284 WP_173876541.1 trigger factor -
  M594_RS08390 (M594_08430) - 1735186..1735842 (-) 657 Protein_1622 DNA alkylation repair protein -
  M594_RS08395 (M594_08435) vraR 1735843..1736475 (-) 633 WP_173876543.1 response regulator transcription factor Regulator
  M594_RS08400 (M594_08440) - 1736489..1737484 (-) 996 WP_173876545.1 sensor histidine kinase -
  M594_RS08405 (M594_08445) liaF 1737481..1738179 (-) 699 WP_001224652.1 cell wall-active antibiotics response protein LiaF -

Sequence

Protein


Download         Length: 788 a.a.        Molecular weight: 88343.00 Da        Isoelectric Point: 4.4959

>NTDB_id=366333 M594_RS08380 WP_173876540.1 1731396..1733762(+) (recD/recD2/recDB) [Streptococcus mitis strain S022-V3-A4]
MEVYFSGTIERIIFENPSNFYRILLLEIDDTDAEDFDDFEIIVTGTMADVIEGEDYTFWGQIVQHSKYGEQLQISRYERA
KPTSKGLVKYFSSSHFKGIGLKTAQKIVDTYGDNTIDEILQHPEKLEGIAGLSAKNREAFVSTLRLNYGTEMVLAKLANY
GIPNKLAFQIQDFYKEETLDVVENYPYQLVEDIKGLGFTIADQLAEELGIESQAPERFRAGLVHSLFQACIETGDTYVEA
RDLLEQTLNLLESSRPVELDPSQVAQELSYLIEEDKVQQVDTKIFDNSLFFAEEGIRSHLVRILEKGKQKSHDLETIQKH
IATVEEDLEIEYDNIQKQAICDAIQNKVFILTGGPGTGKTTVINGIIAVYALLEGLDLRKKSNLPILLAAPTGRAARRMN
ELTGLPSATIHRHLGMTGDDDTSHLEDYLDADFIIVDEFSMVDTWLANQLFSNISSNSKILIVGDSDQLPSVSPGQVLAD
LLHIPLIPQTRLEKIYRQSEESTIVTLASQIRQGILPADFTQKKADRSYFEIASGHIPATIEKILGAALRSGIPARDIQV
LAPMYRGTAGIDAINQLMQDLLNPPQKDQLSFEAPQCHYRKGDKVIHLVNDAEINVFNGDLGAITDLIPSKYTESKQDEI
VIDFDGNEVSYPRNEWYKIRLAYAMSIHKSQGSEFPVVILPITSASRRMLERNLIYTAITRAKSKLILLGELQAFDYATQ
HIGTARKTYLIERFSDLLENVEEKQPAVSETATSSASEQSYILTEENWDSIPAMIGITDADLKEIFGK

Nucleotide


Download         Length: 2367 bp        

>NTDB_id=366333 M594_RS08380 WP_173876540.1 1731396..1733762(+) (recD/recD2/recDB) [Streptococcus mitis strain S022-V3-A4]
ATGGAAGTTTATTTTTCAGGAACCATTGAACGGATTATTTTTGAAAATCCCAGCAATTTTTATCGCATCCTCCTCCTAGA
AATCGACGATACGGACGCAGAGGATTTTGATGATTTTGAAATTATTGTCACCGGTACCATGGCTGACGTGATTGAGGGAG
AAGACTATACTTTTTGGGGACAAATTGTCCAGCACTCCAAGTATGGGGAACAACTGCAAATCAGTCGTTATGAAAGAGCA
AAACCAACTAGCAAGGGCTTGGTCAAGTACTTTTCAAGTAGCCATTTCAAGGGAATTGGTCTCAAGACAGCTCAGAAAAT
CGTGGATACCTATGGCGACAATACCATTGACGAAATTCTGCAACACCCAGAAAAGTTAGAAGGCATTGCAGGACTATCTG
CAAAAAATCGCGAGGCTTTCGTCTCCACTCTCCGTCTCAACTACGGAACCGAGATGGTTTTGGCCAAACTAGCCAACTAC
GGCATTCCCAATAAACTAGCCTTCCAGATTCAAGATTTTTACAAGGAAGAAACCCTTGATGTGGTTGAAAATTATCCCTA
TCAGCTAGTTGAGGATATCAAGGGTTTGGGATTTACCATTGCTGACCAACTAGCGGAGGAACTGGGCATCGAAAGTCAGG
CTCCTGAGCGCTTTCGTGCCGGTCTAGTTCACAGTCTTTTTCAGGCCTGTATTGAAACAGGGGACACCTATGTTGAAGCA
CGGGATTTGCTGGAACAAACCCTTAATCTCCTTGAATCTTCTCGCCCCGTGGAACTGGATCCCAGCCAAGTGGCCCAAGA
ACTCTCCTACCTGATTGAAGAAGACAAGGTTCAGCAGGTTGATACCAAGATTTTTGACAACAGCCTCTTTTTCGCTGAGG
AAGGCATCCGCAGTCACTTGGTTCGTATCCTTGAAAAAGGAAAACAGAAGAGTCATGATTTAGAAACCATTCAAAAACAT
ATCGCTACTGTCGAAGAAGATCTGGAGATTGAATATGATAACATTCAAAAACAGGCTATCTGTGATGCTATCCAGAATAA
GGTCTTTATCCTGACAGGTGGACCTGGTACTGGTAAGACAACTGTTATCAATGGGATCATCGCTGTCTATGCTCTTTTAG
AAGGACTTGACCTCAGGAAAAAAAGCAACCTGCCGATTCTTCTTGCTGCTCCAACTGGACGAGCCGCTCGGCGCATGAAT
GAATTGACAGGTTTGCCTAGCGCGACCATACACCGCCATTTGGGAATGACAGGGGACGATGATACCAGTCATCTGGAAGA
TTATCTGGATGCTGACTTTATCATCGTAGATGAATTTTCCATGGTGGATACTTGGCTGGCCAACCAACTCTTCTCCAACA
TCTCTTCTAACAGTAAAATTCTCATCGTAGGTGACAGCGACCAACTACCGTCTGTCAGCCCTGGACAGGTTCTAGCGGAT
CTGCTTCATATTCCCTTGATTCCTCAGACTCGTTTGGAAAAAATTTACCGACAAAGCGAAGAATCAACCATCGTCACCCT
AGCTAGTCAGATTCGACAGGGTATCTTGCCAGCTGATTTCACCCAGAAAAAAGCAGACCGTTCCTACTTTGAAATTGCTA
GTGGCCATATTCCTGCTACGATTGAGAAAATCTTAGGCGCTGCCCTAAGAAGTGGTATCCCTGCCCGTGATATCCAAGTT
CTGGCGCCCATGTACCGAGGAACAGCAGGGATTGATGCCATCAATCAGCTCATGCAAGACCTCCTGAACCCACCACAAAA
AGATCAACTCAGTTTTGAAGCTCCCCAGTGCCACTATCGCAAGGGAGACAAGGTCATTCATTTGGTCAACGATGCTGAAA
TCAATGTCTTTAATGGAGATTTAGGAGCCATCACAGACCTGATTCCGAGTAAATACACTGAGTCGAAACAAGACGAGATT
GTCATTGATTTTGATGGCAACGAGGTTTCTTACCCACGTAACGAATGGTACAAAATTCGCTTGGCCTATGCCATGAGTAT
CCATAAGTCCCAGGGAAGTGAGTTCCCTGTTGTCATCCTACCTATCACCAGTGCTAGTAGGCGTATGCTGGAGCGCAATC
TCATCTATACAGCCATTACACGCGCCAAAAGCAAGCTTATCTTACTAGGCGAATTACAGGCCTTCGACTATGCTACCCAA
CATATCGGAACTGCCCGAAAAACCTATCTGATTGAACGTTTCAGTGATTTATTGGAGAATGTTGAAGAAAAGCAACCAGC
TGTCTCTGAAACTGCCACATCAAGTGCCTCTGAACAATCCTACATCCTAACCGAAGAAAACTGGGATAGCATCCCCGCCA
TGATTGGGATTACAGATGCAGACCTCAAAGAGATTTTTGGAAAATAG

Domains

Predicted by InterProScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(662-709)

Helix-hairpin-helix containing domain (HHH_RecD2)

(148-237)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(574-644)

AAA domain (AAA_30)

(332-520)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

41.589

95.812

0.398

Multiple sequence alignment