Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   FGE23_RS02290 Genome accession   NZ_CP040672
Coordinates   462802..463491 (-) Length   229 a.a.
NCBI ID   WP_202980098.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain X030     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 457802..468491
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGE23_RS02255 fliW 457893..458324 (-) 432 WP_060657507.1 flagellar assembly protein FliW -
  FGE23_RS02260 - 458354..458923 (-) 570 WP_003151397.1 DUF6470 family protein -
  FGE23_RS02265 flgL 459014..459931 (-) 918 WP_003151396.1 flagellar hook-associated protein FlgL -
  FGE23_RS02270 flgK 459943..461460 (-) 1518 WP_015387629.1 flagellar hook-associated protein FlgK -
  FGE23_RS02275 - 461476..461958 (-) 483 WP_003151394.1 flagellar protein FlgN -
  FGE23_RS02280 flgM 461973..462239 (-) 267 WP_146275630.1 flagellar biosynthesis anti-sigma factor FlgM -
  FGE23_RS02285 - 462309..462728 (-) 420 WP_146275632.1 TIGR03826 family flagellar region protein -
  FGE23_RS02290 comFC 462802..463491 (-) 690 WP_202980098.1 phosphoribosyltransferase family protein Machinery gene
  FGE23_RS02295 - 463497..463781 (-) 285 WP_017418816.1 late competence development ComFB family protein -
  FGE23_RS02300 comFA 463839..465224 (-) 1386 WP_146275634.1 DEAD/DEAH box helicase Machinery gene
  FGE23_RS02305 - 465332..466180 (-) 849 WP_003151387.1 DegV family protein -
  FGE23_RS02310 degU 466278..466967 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  FGE23_RS02315 degS 467044..468207 (-) 1164 WP_015387626.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25273.98 Da        Isoelectric Point: 8.4880

>NTDB_id=366332 FGE23_RS02290 WP_202980098.1 462802..463491(-) (comFC) [Bacillus amyloliquefaciens strain X030]
MNCLLCDSPISSSLTWRSLFSLAPEQEVCTICSSRFEKIEGPVCTICGRPQESNEKCADCAARESKTEKRFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFGRDFAAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVIFPLIRL
NNEKQSKKSKTERLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=366332 FGE23_RS02290 WP_202980098.1 462802..463491(-) (comFC) [Bacillus amyloliquefaciens strain X030]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAGCAAGA
GGTATGCACCATATGCAGCAGCCGATTCGAAAAAATTGAAGGCCCCGTATGCACTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTGTATAATGATGCGATGAAGGACTCATTAGCCCGGTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGGACG
TGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTTCCCCCTCATCCGACTG
AACAATGAAAAACAATCCAAAAAGAGCAAAACAGAAAGGCTGTCCGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCGGC
CGAAGGTATGAACGTCATCTTAATAGACGATATTTATACGACGGGCGCCACACTGCATCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGTAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(2-61)

Phosphoribosyl transferase domain (Pribosyltran)

(144-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

60.793

99.127

0.603

Multiple sequence alignment