NTDB

Overview

Name	ysxA/radC	Type	Machinery gene
Locus tag	E3S74_RS08455	Genome accession	NZ_CP047851
Coordinates	1753946..1754632 (-)	Length	228 a.a.
NCBI ID	WP_201748831.1	Uniprot ID	-
Organism	Staphylococcus aureus strain UP_338
Function	homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1748946..1759632

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
E3S74_RS08410 (E3S74_08410)	rpmA	1749660..1749944 (-)	285	WP_000916187.1	50S ribosomal protein L27	-
E3S74_RS08415 (E3S74_08415)	-	1749956..1750276 (-)	321	WP_000633692.1	ribosomal-processing cysteine protease Prp	-
E3S74_RS08420 (E3S74_08420)	rplU	1750282..1750590 (-)	309	WP_000457386.1	50S ribosomal protein L21	-
E3S74_RS08425 (E3S74_08425)	mreD	1750883..1751413 (-)	531	WP_001259929.1	rod shape-determining protein MreD	-
E3S74_RS08430 (E3S74_08430)	mreC	1751413..1752255 (-)	843	WP_000911041.1	rod shape-determining protein MreC	-
E3S74_RS08435 (E3S74_08435)	-	1752455..1752574 (-)	120	WP_000840603.1	hypothetical protein	-
E3S74_RS08440 (E3S74_08440)	-	1752648..1753121 (-)	474	WP_001236733.1	DUF4930 family protein	-
E3S74_RS08445 (E3S74_08445)	-	1753281..1753478 (+)	198	WP_000025835.1	hypothetical protein	-
E3S74_RS08450 (E3S74_08450)	-	1753594..1753878 (-)	285	WP_000171861.1	hypothetical protein	-
E3S74_RS08455 (E3S74_08455)	ysxA/radC	1753946..1754632 (-)	687	WP_201748831.1	RadC family protein	Machinery gene
E3S74_RS08460 (E3S74_08460)	-	1754629..1755336 (-)	708	WP_000261106.1	prepilin peptidase	-
E3S74_RS08465 (E3S74_08465)	-	1755597..1756868 (-)	1272	WP_001108339.1	bifunctional folylpolyglutamate synthase/dihydrofolate synthase	-
E3S74_RS08470 (E3S74_08470)	-	1756881..1759511 (-)	2631	WP_000425358.1	valine--tRNA ligase	-

Sequence

Protein

Download Length: 228 a.a. Molecular weight: 25344.31 Da Isoelectric Point: 7.4360

                                >NTDB_id=365437 E3S74_RS08455 WP_201748831.1 1753946..1754632(-) (ysxA/radC) [Staphylococcus aureus strain UP_338]

MKIKEMVTSEMPRERLLSHGAKSLSNTELLAILINTGRKGFSSIDISNELLKSASNLNELKKSSINDLIQVKGIGLQKAI

TLKAAFELGERMGRRAENNRIKITQPSDVADYMIPTMKDLTQEHFVILLLNSKNVVIKETCVFKGTLNSSIVHPREFFSI

AVRENANAIIAVHNHPSGDVTPSQEDIITTMRLKKCGLILGIDLLDHIIIGDNRFTSLVEAGYFDEND

Nucleotide

Download Length: 687 bp

                                >NTDB_id=365437 E3S74_RS08455 WP_201748831.1 1753946..1754632(-) (ysxA/radC) [Staphylococcus aureus strain UP_338]

TTGAAAATTAAAGAAATGGTAACTTCAGAAATGCCAAGAGAACGTTTGTTAAGCCATGGTGCAAAAAGTCTTTCGAATAC

AGAATTATTAGCTATATTAATTAACACCGGAAGAAAAGGATTCTCGAGTATTGACATTAGTAATGAACTGCTTAAATCTG

CATCGAATCTGAATGAATTGAAAAAATCTTCAATTAACGATTTGATACAAGTTAAAGGGATTGGATTACAAAAAGCAATT

ACATTAAAAGCGGCATTTGAGTTAGGGGAAAGGATGGGGAGAAGAGCTGAAAATAATCGTATAAAAATAACGCAACCAAG

TGATGTTGCTGATTATATGATTCCAACAATGAAAGATTTAACACAAGAACATTTTGTCATTTTATTGTTAAATTCAAAAA

ATGTAGTGATTAAAGAAACCTGTGTTTTTAAAGGTACATTAAATAGTTCGATTGTACATCCACGTGAATTTTTTAGTATT

GCGGTGAGAGAAAATGCCAATGCAATCATCGCAGTTCATAATCATCCATCCGGTGATGTAACGCCCTCACAAGAAGATAT

AATAACAACAATGAGGTTGAAGAAGTGTGGTTTGATTTTAGGAATAGATTTATTGGATCATATTATAATCGGTGATAATA

GATTTACCAGTCTTGTAGAAGCGGGTTACTTTGATGAAAATGATTGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(103-222)

UPF0758 N-terminal (UPF0758_N)

(3-80)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
ysxA/radC	Bacillus subtilis subsp. subtilis str. 168	52.232	98.246	0.513
radC	Streptococcus gordonii str. Challis substr. CH1	38.991	95.614	0.373
radC	Streptococcus pneumoniae TIGR4	40.094	92.982	0.373
radC	Streptococcus pneumoniae R6	39.623	92.982	0.368
radC	Streptococcus pneumoniae D39	39.623	92.982	0.368

Detailed information NTG0365437