Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   SLGD_RS12210 Genome accession   NC_013893
Coordinates   2571021..2571530 (-) Length   169 a.a.
NCBI ID   WP_002461102.1    Uniprot ID   A0A133Q7N8
Organism   Staphylococcus lugdunensis HKU09-01     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2566021..2576530
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SLGD_RS12175 (SLGD_02486) - 2566554..2566805 (-) 252 WP_172412362.1 GlsB/YeaQ/YmgE family stress response membrane protein -
  SLGD_RS12180 - 2566954..2567184 (-) 231 WP_002461108.1 DUF3923 family protein -
  SLGD_RS12185 (SLGD_02487) - 2567422..2567679 (+) 258 WP_002461107.1 hypothetical protein -
  SLGD_RS13305 (SLGD_02488) - 2568162..2568326 (+) 165 WP_002479244.1 hypothetical protein -
  SLGD_RS12190 (SLGD_02489) - 2568668..2568865 (-) 198 WP_002461105.1 hypothetical protein -
  SLGD_RS12195 (SLGD_02490) - 2569785..2570033 (-) 249 WP_002479242.1 hypothetical protein -
  SLGD_RS12205 (SLGD_02491) rpsR 2570732..2570974 (-) 243 WP_002461103.1 30S ribosomal protein S18 -
  SLGD_RS12210 (SLGD_02492) ssbA 2571021..2571530 (-) 510 WP_002461102.1 single-stranded DNA-binding protein Machinery gene
  SLGD_RS12215 (SLGD_02493) rpsF 2571552..2571848 (-) 297 WP_002461101.1 30S ribosomal protein S6 -
  SLGD_RS12220 (SLGD_02494) - 2572166..2572951 (+) 786 WP_002479241.1 GH25 family lysozyme -
  SLGD_RS12225 (SLGD_02495) - 2573013..2573204 (+) 192 WP_002479240.1 hypothetical protein -
  SLGD_RS12230 (SLGD_02496) ychF 2573444..2574541 (-) 1098 WP_002479239.1 redox-regulated ATPase YchF -
  SLGD_RS12235 (SLGD_02497) - 2574541..2574756 (-) 216 WP_002479238.1 DUF951 domain-containing protein -
  SLGD_RS12240 (SLGD_02498) - 2574774..2575655 (-) 882 WP_002479237.1 mechanosensitive ion channel family protein -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18747.34 Da        Isoelectric Point: 4.9366

>NTDB_id=36518 SLGD_RS12210 WP_002461102.1 2571021..2571530(-) (ssbA) [Staphylococcus lugdunensis HKU09-01]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQAENVNNYLNKGSLAGVDGRLQSR
SYENQEGRRIFVTEVVCDSVQFLEPKNAQHGGQRSQNNEFQDYGQGFGGQQSGQNTSYNNNNASKSNQNDNPFANANGPI
DISDDDLPF

Nucleotide


Download         Length: 510 bp        

>NTDB_id=36518 SLGD_RS12210 WP_002461102.1 2571021..2571530(-) (ssbA) [Staphylococcus lugdunensis HKU09-01]
ATGTTAAATAGAGTTGTATTAGTAGGTCGTTTAACCAAAGATCCAGAATACAGAACTACTCCCTCAGGCGTAAGTGTAGC
GACTTTTACTTTAGCTGTTAATCGTACATTCACGAATGCTCAAGGGGAACGCGAAGCTGACTTTATCAACTGTGTTGTTT
TTAGAAGACAAGCAGAAAACGTTAATAACTATTTAAATAAAGGTAGTTTAGCCGGCGTTGATGGTCGCTTACAATCACGT
AGTTATGAAAATCAAGAAGGTCGTCGTATTTTTGTTACCGAAGTTGTATGTGACAGTGTTCAATTCCTTGAACCTAAGAA
CGCACAACATGGTGGCCAACGTTCACAAAACAATGAATTCCAAGACTATGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAATACGTCATATAATAACAATAACGCATCAAAATCTAATCAAAACGATAATCCATTTGCCAATGCTAATGGACCGATT
GATATTAGTGATGATGACTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A133Q7N8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

65.896

100

0.675
  ssb Latilactobacillus sakei subsp. sakei 23K

54.651

100

0.556
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.434

62.722

0.373
  ssb Glaesserella parasuis strain SC1401

34.463

100

0.361

Multiple sequence alignment