Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   BPGQ101_RS11915 Genome accession   NZ_CP040514
Coordinates   2300891..2301184 (-) Length   97 a.a.
NCBI ID   WP_008342186.1    Uniprot ID   A0A5K1NAM4
Organism   Bacillus altitudinis strain GQYP101     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2295891..2306184
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BPGQ101_RS11865 (BPGQ101_11870) sinR 2296055..2296390 (+) 336 WP_017357978.1 transcriptional regulator SinR Regulator
  BPGQ101_RS11870 (BPGQ101_11875) tasA 2296458..2297258 (-) 801 WP_008342195.1 biofilm matrix protein TasA -
  BPGQ101_RS11875 (BPGQ101_11880) sipW 2297317..2297889 (-) 573 WP_138278719.1 signal peptidase I SipW -
  BPGQ101_RS11880 (BPGQ101_11885) tapA 2297939..2298466 (-) 528 WP_056705241.1 amyloid fiber anchoring/assembly protein TapA -
  BPGQ101_RS11885 (BPGQ101_11890) - 2298737..2299045 (+) 309 WP_170916850.1 DUF3889 domain-containing protein -
  BPGQ101_RS11890 (BPGQ101_11895) - 2299080..2299274 (-) 195 WP_008342191.1 YqzE family protein -
  BPGQ101_RS11895 (BPGQ101_11900) - 2299335..2299718 (-) 384 WP_138278721.1 competence type IV pilus minor pilin ComGG -
  BPGQ101_RS11900 (BPGQ101_11905) comGF 2299715..2300212 (-) 498 WP_034647459.1 competence type IV pilus minor pilin ComGF -
  BPGQ101_RS11905 (BPGQ101_11910) comGE 2300154..2300468 (-) 315 WP_138278722.1 competence type IV pilus minor pilin ComGE -
  BPGQ101_RS11910 (BPGQ101_11915) comGD 2300452..2300898 (-) 447 WP_047945463.1 competence type IV pilus minor pilin ComGD -
  BPGQ101_RS11915 (BPGQ101_11920) comGC 2300891..2301184 (-) 294 WP_008342186.1 competence type IV pilus major pilin ComGC Machinery gene
  BPGQ101_RS11920 (BPGQ101_11925) comGB 2301201..2302241 (-) 1041 WP_079920615.1 competence type IV pilus assembly protein ComGB -
  BPGQ101_RS11925 (BPGQ101_11930) comGA 2302222..2303292 (-) 1071 WP_024718839.1 competence type IV pilus ATPase ComGA Machinery gene
  BPGQ101_RS11930 (BPGQ101_11935) - 2303748..2304620 (-) 873 WP_035390819.1 STAS domain-containing protein -
  BPGQ101_RS11940 (BPGQ101_11945) - 2304846..2305226 (-) 381 WP_007501232.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  BPGQ101_RS11945 (BPGQ101_11950) - 2305439..2305681 (+) 243 WP_003217440.1 DUF2626 domain-containing protein -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10728.62 Da        Isoelectric Point: 6.7081

>NTDB_id=364822 BPGQ101_RS11915 WP_008342186.1 2300891..2301184(-) (comGC) [Bacillus altitudinis strain GQYP101]
MNDKGFTLLEMLIVMLVISILLLITIPNITRHHQSIQAKGCEGLKSMVSTQVMAYELEHDGKTPSLAELEKEGYVKKGLT
CPNGKAIFIQNGDVKNE

Nucleotide


Download         Length: 294 bp        

>NTDB_id=364822 BPGQ101_RS11915 WP_008342186.1 2300891..2301184(-) (comGC) [Bacillus altitudinis strain GQYP101]
ATGAATGATAAAGGATTTACACTGTTAGAAATGTTAATTGTCATGCTTGTGATTTCCATTCTTTTATTGATCACCATTCC
AAATATCACTCGGCATCATCAAAGCATTCAAGCAAAGGGCTGTGAAGGGCTGAAATCAATGGTGAGTACACAGGTAATGG
CATATGAATTAGAGCATGACGGCAAGACGCCATCTTTAGCTGAATTAGAAAAAGAAGGCTATGTCAAAAAGGGATTAACT
TGTCCGAATGGAAAAGCAATTTTCATTCAAAACGGGGATGTGAAAAATGAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5K1NAM4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

67.01

100

0.67
  comGC Staphylococcus aureus MW2

41.304

94.845

0.392
  comGC Staphylococcus aureus N315

41.304

94.845

0.392

Multiple sequence alignment