Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   BPGQ101_RS11925 Genome accession   NZ_CP040514
Coordinates   2302222..2303292 (-) Length   356 a.a.
NCBI ID   WP_024718839.1    Uniprot ID   -
Organism   Bacillus altitudinis strain GQYP101     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2297222..2308292
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BPGQ101_RS11875 (BPGQ101_11880) sipW 2297317..2297889 (-) 573 WP_138278719.1 signal peptidase I SipW -
  BPGQ101_RS11880 (BPGQ101_11885) tapA 2297939..2298466 (-) 528 WP_056705241.1 amyloid fiber anchoring/assembly protein TapA -
  BPGQ101_RS11885 (BPGQ101_11890) - 2298737..2299045 (+) 309 WP_170916850.1 DUF3889 domain-containing protein -
  BPGQ101_RS11890 (BPGQ101_11895) - 2299080..2299274 (-) 195 WP_008342191.1 YqzE family protein -
  BPGQ101_RS11895 (BPGQ101_11900) - 2299335..2299718 (-) 384 WP_138278721.1 competence type IV pilus minor pilin ComGG -
  BPGQ101_RS11900 (BPGQ101_11905) comGF 2299715..2300212 (-) 498 WP_034647459.1 competence type IV pilus minor pilin ComGF -
  BPGQ101_RS11905 (BPGQ101_11910) comGE 2300154..2300468 (-) 315 WP_138278722.1 competence type IV pilus minor pilin ComGE -
  BPGQ101_RS11910 (BPGQ101_11915) comGD 2300452..2300898 (-) 447 WP_047945463.1 competence type IV pilus minor pilin ComGD -
  BPGQ101_RS11915 (BPGQ101_11920) comGC 2300891..2301184 (-) 294 WP_008342186.1 competence type IV pilus major pilin ComGC Machinery gene
  BPGQ101_RS11920 (BPGQ101_11925) comGB 2301201..2302241 (-) 1041 WP_079920615.1 competence type IV pilus assembly protein ComGB -
  BPGQ101_RS11925 (BPGQ101_11930) comGA 2302222..2303292 (-) 1071 WP_024718839.1 competence type IV pilus ATPase ComGA Machinery gene
  BPGQ101_RS11930 (BPGQ101_11935) - 2303748..2304620 (-) 873 WP_035390819.1 STAS domain-containing protein -
  BPGQ101_RS11940 (BPGQ101_11945) - 2304846..2305226 (-) 381 WP_007501232.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  BPGQ101_RS11945 (BPGQ101_11950) - 2305439..2305681 (+) 243 WP_003217440.1 DUF2626 domain-containing protein -
  BPGQ101_RS11950 (BPGQ101_11955) - 2305730..2306368 (-) 639 WP_138278723.1 MBL fold metallo-hydrolase -
  BPGQ101_RS11955 (BPGQ101_11960) - 2306529..2306702 (+) 174 WP_003217333.1 DUF2759 domain-containing protein -
  BPGQ101_RS11960 (BPGQ101_11965) - 2306925..2307239 (-) 315 WP_017367597.1 MTH1187 family thiamine-binding protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 40366.72 Da        Isoelectric Point: 9.0449

>NTDB_id=364823 BPGQ101_RS11925 WP_024718839.1 2302222..2303292(-) (comGA) [Bacillus altitudinis strain GQYP101]
MYGIEYLGQELLEEACRMRASDVHIVPREKEASVSFRVDADLIQQRIIDKKSGERLIAHFKFLSSMDIGERRRPQNGSLA
VMLRRGQVFVRLSTLPTVNDESLVIRILPQDHVPKTKYLSLFPKASARLLSFLNHSHGLILFTGPTNSGKTTTLYSLIQF
AKKHFNRNIITLEDPVETRNEEVLQVQVNEKAGITYAAGLRAILRHDPDMIVLGEIRDAETARTAIRAALTGHLVMSTLH
AKNAKGALYRMLEFGVTMNELEQTMVAIAAQRLIELACPFCGETCELYCKLNRPVRRTNVFELLYGKELGECIKEAKGEY
AHSSYETLQRLIRKGVALGYLSKSTYHRWVYEEANL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=364823 BPGQ101_RS11925 WP_024718839.1 2302222..2303292(-) (comGA) [Bacillus altitudinis strain GQYP101]
TTGTATGGTATTGAATATTTGGGGCAAGAGCTGCTAGAAGAGGCGTGCCGCATGAGAGCATCTGATGTGCATATTGTTCC
GAGAGAAAAGGAAGCTTCAGTCTCTTTTCGTGTAGACGCTGACCTCATTCAGCAGCGGATCATTGACAAAAAGAGCGGAG
AGCGGCTCATTGCTCATTTCAAATTTTTATCTTCTATGGATATTGGTGAAAGAAGGAGACCACAAAATGGATCATTGGCT
GTGATGTTAAGACGCGGTCAAGTGTTTGTTCGGCTCTCTACACTACCAACTGTAAATGATGAAAGTCTAGTGATTCGGAT
TTTACCGCAGGATCATGTGCCGAAAACAAAGTATTTGTCACTGTTCCCGAAGGCTTCAGCGAGATTATTATCGTTTCTGA
ATCATTCGCATGGGCTCATTTTATTTACAGGACCAACAAATTCAGGGAAAACGACAACACTTTATTCATTGATTCAGTTT
GCCAAAAAACATTTTAATCGGAATATTATTACCCTTGAAGATCCTGTGGAAACAAGAAATGAAGAAGTGCTGCAGGTTCA
AGTAAATGAAAAAGCTGGTATCACGTATGCGGCAGGTTTACGCGCTATTTTAAGACATGATCCAGATATGATTGTGCTTG
GAGAAATAAGAGATGCGGAAACAGCCAGAACAGCTATTAGAGCAGCTTTGACAGGTCATTTAGTCATGAGCACATTGCAC
GCAAAGAATGCAAAAGGAGCTCTTTATCGAATGCTCGAATTTGGTGTGACGATGAATGAACTCGAACAAACAATGGTTGC
TATTGCTGCTCAGCGGTTAATCGAACTCGCATGTCCATTTTGCGGCGAAACGTGTGAGCTTTATTGCAAACTAAATCGGC
CAGTCAGACGAACAAATGTATTTGAATTGCTTTACGGAAAGGAGCTTGGTGAGTGTATCAAAGAGGCAAAAGGAGAATAC
GCTCATTCGTCATACGAAACACTGCAAAGGTTAATTCGGAAAGGAGTGGCACTCGGCTATTTATCAAAAAGCACATATCA
TCGCTGGGTTTATGAAGAAGCGAACCTCTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(11-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

64.888

100

0.649

Multiple sequence alignment