Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   BPGQ101_RS11865 Genome accession   NZ_CP040514
Coordinates   2296055..2296390 (+) Length   111 a.a.
NCBI ID   WP_017357978.1    Uniprot ID   -
Organism   Bacillus altitudinis strain GQYP101     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2291055..2301390
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BPGQ101_RS11845 (BPGQ101_11850) gcvT 2291533..2292630 (-) 1098 WP_072367814.1 glycine cleavage system aminomethyltransferase GcvT -
  BPGQ101_RS11850 (BPGQ101_11855) - 2293190..2294860 (+) 1671 WP_008342199.1 DEAD/DEAH box helicase -
  BPGQ101_RS11855 (BPGQ101_11860) - 2294875..2295672 (+) 798 WP_017367588.1 YqhG family protein -
  BPGQ101_RS11860 (BPGQ101_11865) - 2295857..2296021 (+) 165 WP_008342197.1 anti-repressor SinI family protein -
  BPGQ101_RS11865 (BPGQ101_11870) sinR 2296055..2296390 (+) 336 WP_017357978.1 transcriptional regulator SinR Regulator
  BPGQ101_RS11870 (BPGQ101_11875) tasA 2296458..2297258 (-) 801 WP_008342195.1 biofilm matrix protein TasA -
  BPGQ101_RS11875 (BPGQ101_11880) sipW 2297317..2297889 (-) 573 WP_138278719.1 signal peptidase I SipW -
  BPGQ101_RS11880 (BPGQ101_11885) tapA 2297939..2298466 (-) 528 WP_056705241.1 amyloid fiber anchoring/assembly protein TapA -
  BPGQ101_RS11885 (BPGQ101_11890) - 2298737..2299045 (+) 309 WP_170916850.1 DUF3889 domain-containing protein -
  BPGQ101_RS11890 (BPGQ101_11895) - 2299080..2299274 (-) 195 WP_008342191.1 YqzE family protein -
  BPGQ101_RS11895 (BPGQ101_11900) - 2299335..2299718 (-) 384 WP_138278721.1 competence type IV pilus minor pilin ComGG -
  BPGQ101_RS11900 (BPGQ101_11905) comGF 2299715..2300212 (-) 498 WP_034647459.1 competence type IV pilus minor pilin ComGF -
  BPGQ101_RS11905 (BPGQ101_11910) comGE 2300154..2300468 (-) 315 WP_138278722.1 competence type IV pilus minor pilin ComGE -
  BPGQ101_RS11910 (BPGQ101_11915) comGD 2300452..2300898 (-) 447 WP_047945463.1 competence type IV pilus minor pilin ComGD -
  BPGQ101_RS11915 (BPGQ101_11920) comGC 2300891..2301184 (-) 294 WP_008342186.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12936.47 Da        Isoelectric Point: 4.8062

>NTDB_id=364821 BPGQ101_RS11865 WP_017357978.1 2296055..2296390(+) (sinR) [Bacillus altitudinis strain GQYP101]
MIGQRIKQYRNEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLNENDETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQIWKKKQEEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=364821 BPGQ101_RS11865 WP_017357978.1 2296055..2296390(+) (sinR) [Bacillus altitudinis strain GQYP101]
TTGATTGGCCAGCGTATTAAACAATACCGCAATGAAAAAGGCTACTCACTATCAGAACTGGCCGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGTTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTTGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACACTGTTAAACGAAAATGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAA
CTAGTTCGAGATGCAATGACATCAGGGGTTTCGAAAAAGCAATTTCGTGAATTTTTAGATTATCAAATCTGGAAAAAAAA
GCAAGAAGAGGAGTAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

92.793

100

0.928

Multiple sequence alignment