Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   FFA43_RS03305 Genome accession   NZ_CP040464
Coordinates   616489..617262 (+) Length   257 a.a.
NCBI ID   WP_059425203.1    Uniprot ID   A0A9W5ET69
Organism   Campylobacter hyointestinalis subsp. hyointestinalis strain S12     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 611489..622262
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FFA43_RS03290 (FFA43_03290) - 613369..614181 (-) 813 WP_059430627.1 HDOD domain-containing protein -
  FFA43_RS03295 (FFA43_03295) ilvC 614331..615353 (+) 1023 WP_059427122.1 ketol-acid reductoisomerase -
  FFA43_RS03300 (FFA43_03300) - 615354..616505 (+) 1152 WP_059430626.1 divergent polysaccharide deacetylase family protein -
  FFA43_RS03305 (FFA43_03305) dprA 616489..617262 (+) 774 WP_059425203.1 DNA-processing protein DprA Machinery gene
  FFA43_RS03310 (FFA43_03310) dprB 617259..617624 (+) 366 WP_138297622.1 Holliday junction resolvase RuvX Machinery gene
  FFA43_RS03315 (FFA43_03315) - 617641..618483 (+) 843 WP_175403349.1 SAM-dependent methyltransferase -
  FFA43_RS03320 (FFA43_03320) - 618480..619652 (-) 1173 WP_059430624.1 hypothetical protein -
  FFA43_RS03325 (FFA43_03325) queA 619662..620696 (-) 1035 WP_059430623.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  FFA43_RS03330 (FFA43_03330) tatC 620677..621435 (-) 759 WP_059427117.1 twin-arginine translocase subunit TatC -
  FFA43_RS03335 (FFA43_03335) tatB 621435..621872 (-) 438 WP_059425209.1 Sec-independent protein translocase protein TatB -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28576.04 Da        Isoelectric Point: 5.7900

>NTDB_id=364681 FFA43_RS03305 WP_059425203.1 616489..617262(+) (dprA) [Campylobacter hyointestinalis subsp. hyointestinalis strain S12]
MDFITEIPTSLKLLKKPVDKLYYKGDLRLLDFPKIAIVGSRKCSQYTKNLVYSLALILKNHGICVVSGAAIGTDCVAHVG
AYPHTIAVFGNGLENIYPAQNKKIIEQIYKNSLALSEYEPSFIATPWSFLERNRIVVALSDAVVVGEADLKSGSMSSARL
ALDMNIPLFVLPQRLGESNGTNELLKNKKAELITDFDEFALLFKSEKTSVQSGDEVLSFIKTNSNFDECYAKFGDILYEY
ELDGKIVIDGIYVRILQ

Nucleotide


Download         Length: 774 bp        

>NTDB_id=364681 FFA43_RS03305 WP_059425203.1 616489..617262(+) (dprA) [Campylobacter hyointestinalis subsp. hyointestinalis strain S12]
ATGGACTTTATAACTGAAATTCCAACTAGTTTAAAATTACTCAAAAAACCAGTAGATAAACTTTACTATAAAGGTGATCT
TCGGCTTTTAGACTTTCCAAAAATTGCTATAGTTGGTTCAAGAAAATGTTCGCAATACACTAAAAATTTAGTTTATAGCC
TAGCTCTTATTCTTAAAAATCATGGTATCTGTGTTGTTAGTGGAGCGGCGATCGGTACTGACTGCGTTGCTCACGTCGGA
GCCTATCCTCATACCATAGCAGTTTTTGGCAACGGACTTGAAAACATCTATCCTGCTCAAAATAAAAAAATAATAGAACA
AATTTATAAAAACTCACTTGCTCTAAGCGAGTATGAGCCAAGTTTTATAGCAACTCCTTGGAGCTTTTTAGAGCGAAATC
GCATCGTAGTAGCTTTAAGTGACGCGGTCGTTGTAGGCGAAGCTGATTTAAAAAGTGGTTCTATGAGTAGCGCCAGACTT
GCTTTGGATATGAATATACCTTTGTTTGTGCTTCCTCAACGCCTAGGTGAAAGCAATGGGACAAATGAGCTTTTAAAAAA
TAAAAAAGCTGAGCTAATCACTGATTTTGATGAATTCGCGCTTTTGTTTAAGAGTGAAAAAACATCTGTACAAAGCGGTG
ATGAGGTACTAAGCTTTATAAAAACTAACTCAAATTTCGATGAATGCTATGCTAAATTTGGCGATATTTTATATGAATAC
GAGCTTGATGGTAAAATCGTAATAGATGGCATTTACGTAAGGATTTTGCAATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(8-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

56.356

91.829

0.518
  dprA Helicobacter pylori 26695

48.178

96.109

0.463
  dprA Legionella pneumophila strain ERS1305867

34.686

100

0.366

Multiple sequence alignment