Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   FFA43_RS03310 Genome accession   NZ_CP040464
Coordinates   617259..617624 (+) Length   121 a.a.
NCBI ID   WP_138297622.1    Uniprot ID   -
Organism   Campylobacter hyointestinalis subsp. hyointestinalis strain S12     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 612259..622624
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FFA43_RS03290 (FFA43_03290) - 613369..614181 (-) 813 WP_059430627.1 HDOD domain-containing protein -
  FFA43_RS03295 (FFA43_03295) ilvC 614331..615353 (+) 1023 WP_059427122.1 ketol-acid reductoisomerase -
  FFA43_RS03300 (FFA43_03300) - 615354..616505 (+) 1152 WP_059430626.1 divergent polysaccharide deacetylase family protein -
  FFA43_RS03305 (FFA43_03305) dprA 616489..617262 (+) 774 WP_059425203.1 DNA-processing protein DprA Machinery gene
  FFA43_RS03310 (FFA43_03310) dprB 617259..617624 (+) 366 WP_138297622.1 Holliday junction resolvase RuvX Machinery gene
  FFA43_RS03315 (FFA43_03315) - 617641..618483 (+) 843 WP_175403349.1 SAM-dependent methyltransferase -
  FFA43_RS03320 (FFA43_03320) - 618480..619652 (-) 1173 WP_059430624.1 hypothetical protein -
  FFA43_RS03325 (FFA43_03325) queA 619662..620696 (-) 1035 WP_059430623.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  FFA43_RS03330 (FFA43_03330) tatC 620677..621435 (-) 759 WP_059427117.1 twin-arginine translocase subunit TatC -
  FFA43_RS03335 (FFA43_03335) tatB 621435..621872 (-) 438 WP_059425209.1 Sec-independent protein translocase protein TatB -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13483.83 Da        Isoelectric Point: 10.1510

>NTDB_id=364682 FFA43_RS03310 WP_138297622.1 617259..617624(+) (dprB) [Campylobacter hyointestinalis subsp. hyointestinalis strain S12]
MIVAIDVGLKRIGVAFAPNKVLVLPSEPILRKNRVQAANDTLKMLKEKNAKTLVVGLPKGGSSEDEMQRRIKHFISLVGF
DGEIIYQDEAYSSFEASALVKDKRDGKFDSIAAMIILKRYF

Nucleotide


Download         Length: 366 bp        

>NTDB_id=364682 FFA43_RS03310 WP_138297622.1 617259..617624(+) (dprB) [Campylobacter hyointestinalis subsp. hyointestinalis strain S12]
ATGATAGTCGCGATAGACGTTGGCTTAAAAAGAATAGGAGTCGCTTTTGCTCCTAACAAAGTTCTAGTTTTACCTAGTGA
GCCGATACTTCGTAAAAATCGTGTTCAAGCAGCAAATGACACTCTAAAAATGCTAAAAGAAAAAAACGCCAAAACGCTTG
TAGTGGGGCTTCCAAAAGGAGGATCTAGCGAAGATGAAATGCAAAGAAGAATAAAGCATTTTATATCGCTTGTTGGATTT
GATGGGGAGATAATATATCAAGATGAAGCGTATTCGAGTTTTGAAGCAAGTGCTTTGGTAAAAGATAAAAGAGACGGTAA
ATTTGATAGTATTGCCGCGATGATAATACTAAAAAGATATTTTTAA

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

48.837

100

0.521

Multiple sequence alignment