Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   FE005_RS04715 Genome accession   NZ_CP040461
Coordinates   1018769..1019287 (+) Length   172 a.a.
NCBI ID   WP_003129252.1    Uniprot ID   A0A1V8Z0P0
Organism   Enterococcus sp. M190262     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1013769..1024287
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FE005_RS04705 (FE005_04705) gyrA 1015774..1018203 (+) 2430 WP_230321100.1 DNA gyrase subunit A -
  FE005_RS04710 (FE005_04710) rpsF 1018427..1018726 (+) 300 WP_003129251.1 30S ribosomal protein S6 -
  FE005_RS04715 (FE005_04715) ssb 1018769..1019287 (+) 519 WP_003129252.1 single-stranded DNA-binding protein Machinery gene
  FE005_RS04720 (FE005_04720) rpsR 1019311..1019547 (+) 237 WP_003129253.1 30S ribosomal protein S18 -
  FE005_RS04725 (FE005_04725) - 1019807..1021258 (+) 1452 WP_003129254.1 DHH family phosphoesterase -
  FE005_RS04730 (FE005_04730) rplI 1021272..1021724 (+) 453 WP_003129255.1 50S ribosomal protein L9 -
  FE005_RS04735 (FE005_04735) dnaB 1021846..1023216 (+) 1371 WP_138371394.1 replicative DNA helicase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18889.44 Da        Isoelectric Point: 4.7200

>NTDB_id=364639 FE005_RS04715 WP_003129252.1 1018769..1019287(+) (ssb) [Enterococcus sp. M190262]
MINNVVLVGRLTKDPDLRYTANGTGVASFTLAVNRNFTNQSGEREADFINCVIWRKPAETLANYARKGTLLGVTGRIQTR
SYDNQQGQRVYVTEVVADNFQLLESRNASEQRRTTESGGNTSYNTSGSSGFGNNSTNQNQSSQPSGMPNFDRDNSDPFGN
SSIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=364639 FE005_RS04715 WP_003129252.1 1018769..1019287(+) (ssb) [Enterococcus sp. M190262]
TTGATTAATAATGTTGTATTAGTAGGAAGATTAACCAAAGATCCTGATTTACGATACACTGCTAACGGCACTGGCGTCGC
GTCTTTTACATTGGCTGTAAATCGTAATTTTACGAACCAAAGTGGAGAACGTGAAGCTGATTTCATCAATTGTGTGATTT
GGAGAAAACCTGCAGAAACACTGGCTAATTATGCTCGTAAGGGTACATTACTTGGTGTGACTGGAAGAATCCAAACACGT
TCTTATGACAATCAACAAGGACAACGTGTATATGTAACTGAAGTTGTAGCAGACAATTTTCAATTGTTAGAATCTCGTAA
TGCTTCTGAACAACGACGCACTACCGAAAGCGGTGGAAATACTTCGTATAATACTAGTGGTTCTTCTGGATTCGGAAACA
ATAGCACAAATCAAAATCAATCCTCTCAACCATCAGGAATGCCTAACTTTGATCGAGATAATTCTGATCCATTCGGAAAC
TCGTCAATTGACATTTCAGACGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1V8Z0P0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

58.046

100

0.587
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.471

100

0.581
  ssbB Bacillus subtilis subsp. subtilis str. 168

62.264

61.628

0.384

Multiple sequence alignment