Detailed information
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | FED51_RS20890 | Genome accession | NZ_CP040441 |
| Coordinates | 4299455..4299961 (-) | Length | 168 a.a. |
| NCBI ID | WP_053432362.1 | Uniprot ID | A0A0M0KCJ5 |
| Organism | Halalkalibacterium halodurans isolate LB-1 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 4294455..4304961
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FED51_RS20860 | - | 4294529..4295077 (-) | 549 | WP_053432365.1 | tyrosine-type recombinase/integrase | - |
| FED51_RS20865 | - | 4295211..4295468 (-) | 258 | WP_053432364.1 | hypothetical protein | - |
| FED51_RS20870 | - | 4295514..4295743 (-) | 230 | Protein_4133 | hypothetical protein | - |
| FED51_RS20875 | - | 4296521..4297864 (-) | 1344 | WP_083445665.1 | MATE family efflux transporter | - |
| FED51_RS20880 | - | 4297945..4298763 (+) | 819 | WP_053432363.1 | MerR family transcriptional regulator | - |
| FED51_RS20885 | rpsR | 4299140..4299373 (-) | 234 | WP_010900172.1 | 30S ribosomal protein S18 | - |
| FED51_RS20890 | ssbA | 4299455..4299961 (-) | 507 | WP_053432362.1 | single-stranded DNA-binding protein | Machinery gene |
| FED51_RS20895 | rpsF | 4299987..4300274 (-) | 288 | WP_010900174.1 | 30S ribosomal protein S6 | - |
| FED51_RS20900 | ychF | 4300548..4301648 (-) | 1101 | WP_010900175.1 | redox-regulated ATPase YchF | - |
| FED51_RS20905 | - | 4301856..4302053 (-) | 198 | WP_010900176.1 | DUF951 domain-containing protein | - |
| FED51_RS20910 | - | 4302149..4303174 (-) | 1026 | WP_010900177.1 | membrane protein | - |
| FED51_RS20915 | yyaC | 4303274..4303924 (+) | 651 | WP_053432361.1 | spore protease YyaC | - |
| FED51_RS20920 | - | 4303969..4304679 (-) | 711 | WP_053432360.1 | DUF554 domain-containing protein | - |
Sequence
Protein
Download Length: 168 a.a. Molecular weight: 18203.95 Da Isoelectric Point: 4.6324
>NTDB_id=364505 FED51_RS20890 WP_053432362.1 4299455..4299961(-) (ssbA) [Halalkalibacterium halodurans isolate LB-1]
MLNRVVLVGRLTRDPELRYTPNGVAVANFTLAVNRPFSNQQGEREADFINCVVWRKQAENVANYLKKGSLAGVDGRIQTR
SYDNNEGRRVFVTEVMAESVQFLEPRGSQSQGGSNVDNFGGGSPNNPMGGNDFGQQSGGSGRQSGGFAEDPFANDGKPID
ISDDDLPF
MLNRVVLVGRLTRDPELRYTPNGVAVANFTLAVNRPFSNQQGEREADFINCVVWRKQAENVANYLKKGSLAGVDGRIQTR
SYDNNEGRRVFVTEVMAESVQFLEPRGSQSQGGSNVDNFGGGSPNNPMGGNDFGQQSGGSGRQSGGFAEDPFANDGKPID
ISDDDLPF
Nucleotide
Download Length: 507 bp
>NTDB_id=364505 FED51_RS20890 WP_053432362.1 4299455..4299961(-) (ssbA) [Halalkalibacterium halodurans isolate LB-1]
ATGTTAAATCGTGTCGTCCTAGTCGGTCGGTTGACACGTGATCCAGAGTTGCGCTACACGCCAAACGGTGTTGCTGTAGC
AAACTTTACACTTGCTGTAAACCGCCCGTTCTCGAACCAACAAGGAGAGCGCGAAGCAGATTTCATTAACTGTGTCGTTT
GGCGGAAGCAAGCGGAGAACGTGGCGAACTATTTGAAAAAGGGAAGTCTAGCTGGTGTTGATGGTCGGATTCAAACGCGC
AGTTATGACAACAATGAAGGCCGCAGAGTCTTTGTGACAGAGGTCATGGCAGAAAGCGTTCAATTCCTTGAACCGCGCGG
CTCACAAAGCCAAGGGGGATCAAACGTTGACAACTTTGGTGGCGGCTCCCCTAACAACCCAATGGGCGGTAATGATTTCG
GGCAACAATCTGGTGGCTCCGGACGTCAATCCGGTGGTTTCGCAGAAGACCCGTTTGCAAATGATGGCAAGCCAATCGAT
ATTTCCGATGATGATTTGCCATTCTAA
ATGTTAAATCGTGTCGTCCTAGTCGGTCGGTTGACACGTGATCCAGAGTTGCGCTACACGCCAAACGGTGTTGCTGTAGC
AAACTTTACACTTGCTGTAAACCGCCCGTTCTCGAACCAACAAGGAGAGCGCGAAGCAGATTTCATTAACTGTGTCGTTT
GGCGGAAGCAAGCGGAGAACGTGGCGAACTATTTGAAAAAGGGAAGTCTAGCTGGTGTTGATGGTCGGATTCAAACGCGC
AGTTATGACAACAATGAAGGCCGCAGAGTCTTTGTGACAGAGGTCATGGCAGAAAGCGTTCAATTCCTTGAACCGCGCGG
CTCACAAAGCCAAGGGGGATCAAACGTTGACAACTTTGGTGGCGGCTCCCCTAACAACCCAATGGGCGGTAATGATTTCG
GGCAACAATCTGGTGGCTCCGGACGTCAATCCGGTGGTTTCGCAGAAGACCCGTTTGCAAATGATGGCAAGCCAATCGAT
ATTTCCGATGATGATTTGCCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
68.75 |
100 |
0.72 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
55.294 |
100 |
0.56 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
64.151 |
63.095 |
0.405 |
| ssb | Neisseria gonorrhoeae MS11 |
35 |
100 |
0.375 |