Detailed information    

insolico Bioinformatically predicted

Overview


Name   ssbA   Type   Machinery gene
Locus tag   FED51_RS20890 Genome accession   NZ_CP040441
Coordinates   4299455..4299961 (-) Length   168 a.a.
NCBI ID   WP_053432362.1    Uniprot ID   A0A0M0KCJ5
Organism   Halalkalibacterium halodurans isolate LB-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context


Location: 4294455..4304961
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FED51_RS20860 - 4294529..4295077 (-) 549 WP_053432365.1 tyrosine-type recombinase/integrase -
  FED51_RS20865 - 4295211..4295468 (-) 258 WP_053432364.1 hypothetical protein -
  FED51_RS20870 - 4295514..4295743 (-) 230 Protein_4133 hypothetical protein -
  FED51_RS20875 - 4296521..4297864 (-) 1344 WP_083445665.1 MATE family efflux transporter -
  FED51_RS20880 - 4297945..4298763 (+) 819 WP_053432363.1 MerR family transcriptional regulator -
  FED51_RS20885 rpsR 4299140..4299373 (-) 234 WP_010900172.1 30S ribosomal protein S18 -
  FED51_RS20890 ssbA 4299455..4299961 (-) 507 WP_053432362.1 single-stranded DNA-binding protein Machinery gene
  FED51_RS20895 rpsF 4299987..4300274 (-) 288 WP_010900174.1 30S ribosomal protein S6 -
  FED51_RS20900 ychF 4300548..4301648 (-) 1101 WP_010900175.1 redox-regulated ATPase YchF -
  FED51_RS20905 - 4301856..4302053 (-) 198 WP_010900176.1 DUF951 domain-containing protein -
  FED51_RS20910 - 4302149..4303174 (-) 1026 WP_010900177.1 membrane protein -
  FED51_RS20915 yyaC 4303274..4303924 (+) 651 WP_053432361.1 spore protease YyaC -
  FED51_RS20920 - 4303969..4304679 (-) 711 WP_053432360.1 DUF554 domain-containing protein -

Sequence


Protein


Download         Length: 168 a.a.        Molecular weight: 18203.95 Da        Isoelectric Point: 4.6324

>NTDB_id=364505 FED51_RS20890 WP_053432362.1 4299455..4299961(-) (ssbA) [Halalkalibacterium halodurans isolate LB-1]
MLNRVVLVGRLTRDPELRYTPNGVAVANFTLAVNRPFSNQQGEREADFINCVVWRKQAENVANYLKKGSLAGVDGRIQTR
SYDNNEGRRVFVTEVMAESVQFLEPRGSQSQGGSNVDNFGGGSPNNPMGGNDFGQQSGGSGRQSGGFAEDPFANDGKPID
ISDDDLPF

Nucleotide


Download         Length: 507 bp        

>NTDB_id=364505 FED51_RS20890 WP_053432362.1 4299455..4299961(-) (ssbA) [Halalkalibacterium halodurans isolate LB-1]
ATGTTAAATCGTGTCGTCCTAGTCGGTCGGTTGACACGTGATCCAGAGTTGCGCTACACGCCAAACGGTGTTGCTGTAGC
AAACTTTACACTTGCTGTAAACCGCCCGTTCTCGAACCAACAAGGAGAGCGCGAAGCAGATTTCATTAACTGTGTCGTTT
GGCGGAAGCAAGCGGAGAACGTGGCGAACTATTTGAAAAAGGGAAGTCTAGCTGGTGTTGATGGTCGGATTCAAACGCGC
AGTTATGACAACAATGAAGGCCGCAGAGTCTTTGTGACAGAGGTCATGGCAGAAAGCGTTCAATTCCTTGAACCGCGCGG
CTCACAAAGCCAAGGGGGATCAAACGTTGACAACTTTGGTGGCGGCTCCCCTAACAACCCAATGGGCGGTAATGATTTCG
GGCAACAATCTGGTGGCTCCGGACGTCAATCCGGTGGTTTCGCAGAAGACCCGTTTGCAAATGATGGCAAGCCAATCGAT
ATTTCCGATGATGATTTGCCATTCTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A0M0KCJ5

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

68.75

100

0.72

  ssb Latilactobacillus sakei subsp. sakei 23K

55.294

100

0.56

  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

63.095

0.405

  ssb Neisseria gonorrhoeae MS11

35

100

0.375


Multiple sequence alignment